G109471


Basic Information

Item Value
gene id G109471
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1940129 ~ 1941153 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161765
cgtggcgcgggcacaggaacgggacagagcgcacgtggcgcgggcacaggaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgggcttactgggtagctgaacgggaacaggaactcaggatacaggggaggtgcccagtctaagtccaagtccaagtctacatcatccagctccctttgcagatccagcagccccaggtggatgatcagctcatcctcagccgatgtgtagtgggcggagctccactccgcgctctcctcgcagtcggctgtctccaccgcggggagctccgttgctggctcgcgcacctggtctgacgtatacggctcgggtcctgttacgctccacggctctgtcgctctctgtgacgatgggtccgtggtcacgctcgactccgcccccgtgtcagcagtgggctcaggctggggctcgaccatgcg
>TU161766
gaaaacttgaggcggcactggaggaagcgcacagggcgcgggcacaggaacgggacggagcgcacggggcgcgggcacaggaacgggacggagcgcacggggcgcgggcacaggaacgggacggagcgcacggggcgcgggcactggaacgggacagagcgcacgtggcgcgggcacaggaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgggcttactgggtagctgaacgggaacaggaactcaggatacaggggaggtgcccagtctaagtccaagtccaagtctacatcatccagctccctttgcagatccagcagccccaggtggatgatcagctcatcctcagccgatgtgtagtgggcggagctccactccgcgctctcctcgcagtcggctgtctccaccgcggggagctccgttgctggctcgcgcacctggtctgacgtatacggctcgggtcctgttacgctccacggctctgtcgctctctgtgacgatgggtccgtggtcacgctcgactccgcccccgtgtcagcagtgggctcaggctggggctcgaccatgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161765 False 704 lncRNA 0.67 2 1940129 1940862
TU161766 True 834 lncRNA 0.68 3 1940129 1941153

Neighbor

gene id symbol gene type direction distance location
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding downstream 220014 1718035 ~ 1720115 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding downstream 235408 1684904 ~ 1704721 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding downstream 277502 1656548 ~ 1662627 (-)
si:ch73-341k19.1 LOC107551746 coding downstream 285602 1648367 ~ 1654527 (-)
pmvk pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277 coding downstream 390198 1545287 ~ 1549931 (-)
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding upstream 59628 2000781 ~ 2010666 (-)
LOC122360106 NA coding upstream 759168 2700321 ~ 2700949 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding upstream 958160 2899313 ~ 2915431 (-)
ascc3 ascc3 coding upstream 974502 2915655 ~ 3064578 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding upstream 1742965 3684118 ~ 3699070 (-)
G109444 bmper,LOC107661004,LOC107551747,LOC107697278,LOC107720165 non-coding downstream 293980 1645614 ~ 1646149 (-)
G109442 bmper,LOC107551747,LOC107697278,LOC107720165,LOC107661004 non-coding downstream 295956 1643873 ~ 1644173 (-)
G109441 bmper,LOC107661004,LOC107697278,LOC107551747,LOC107720165 non-coding downstream 297086 1642630 ~ 1643043 (-)
G109440 NA non-coding downstream 298817 1640777 ~ 1641312 (-)
G109439 NA non-coding downstream 303132 1636416 ~ 1636997 (-)
G109481 NA non-coding upstream 278413 2219566 ~ 2225804 (-)
G109482 NA non-coding upstream 332399 2273552 ~ 2273936 (-)
G109485 NA non-coding upstream 337863 2279016 ~ 2279655 (-)
G109490 NA non-coding upstream 459533 2400686 ~ 2400892 (-)
G109500 NA non-coding upstream 571622 2512775 ~ 2513567 (-)
G109287 NA other downstream 1057377 882459 ~ 882752 (-)
G109275 NA other downstream 1307232 632465 ~ 632897 (-)
G109600 NA other upstream 1172689 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2153604 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 3291058 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 3841514 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 3875887 5817040 ~ 5818618 (-)

Expression


Co-expression Network