G109485


Basic Information

Item Value
gene id G109485
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2279016 ~ 2279655 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161780
GCCTGGGCTGAATAATGAGAGGGAAGTTTCCCTGCAGTCactatctctttttctgacacaaCAGCATAACCACATTGATTTTCACCTTGACTATTTTTAGAGCATGAACCATCTACAAACAGTGTCTCTCCCTCAGTTAATGGAACATCTCTCAAGTCAGGCCTAGGTTTGCAATTCTGTTCTGTGCTGGTCAAGCAACAGTGTGGTGTGCCGTCATTACAGGTTGGCAACAGAGAAGATGGGTTTAATGTCGTACATCTTTTGATGGTGAGATGTGGCTGTGACATTAAAATGGACATGACAGCTAAATGTCTTGCTGGtgatagaaatgacatttttgtttcagttaatagTGCGTCGACTGAGTGTGGGACCAATAGTGTGAGTTTATGAAACAACACTACTTCAGCTGATGCCTGGACGGCCAGGGCTGCTGCACATACAGCTCTCACGCAAGGCGGAAGTGCACAAGCCACTGGATCTAACCTCTTGGAGTAGTAAGCTACTGGTTTGTTCTTTCCACCTGACTCCTGTGTCAGCACTGACGTCATAAATTTGTCCTTGCAGTCTACTGTCTGATTAAATGGTTTGGAATAATCAGGTAAACTCAACACTGTGGATTGAATCAATCCCTCCTTTA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU161780 True 640 lncRNA 0.44 1 2279016 2279655

Neighbor

gene id symbol gene type direction distance location
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding downstream 268350 2000781 ~ 2010666 (-)
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding downstream 558901 1718035 ~ 1720115 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding downstream 574295 1684904 ~ 1704721 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding downstream 616389 1656548 ~ 1662627 (-)
si:ch73-341k19.1 LOC107551746 coding downstream 624489 1648367 ~ 1654527 (-)
LOC122360106 NA coding upstream 420666 2700321 ~ 2700949 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding upstream 619658 2899313 ~ 2915431 (-)
ascc3 ascc3 coding upstream 636000 2915655 ~ 3064578 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding upstream 1404463 3684118 ~ 3699070 (-)
csf3r NA coding upstream 1449487 3729142 ~ 3743612 (-)
G109482 NA non-coding downstream 5080 2273552 ~ 2273936 (-)
G109481 NA non-coding downstream 53212 2219566 ~ 2225804 (-)
G109466 NA non-coding downstream 193343 1827162 ~ 2085673 (-)
G109465 NA non-coding downstream 200073 1817262 ~ 2078943 (-)
G109460 NA non-coding downstream 281709 1736188 ~ 1997307 (-)
G109490 NA non-coding upstream 121031 2400686 ~ 2400892 (-)
G109500 NA non-coding upstream 233120 2512775 ~ 2513567 (-)
G109503 NA non-coding upstream 243477 2523132 ~ 2523489 (-)
G109509 NA non-coding upstream 249149 2528804 ~ 2529999 (-)
G109522 NA non-coding upstream 397548 2677203 ~ 2680338 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 314855 1741120 ~ 1964161 (-)
G109287 NA other downstream 1396264 882459 ~ 882752 (-)
G109275 NA other downstream 1646119 632465 ~ 632897 (-)
G109600 NA other upstream 834187 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 1815102 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 2952556 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 3503012 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 3537385 5817040 ~ 5818618 (-)

Expression


Co-expression Network