G109509


Basic Information

Item Value
gene id G109509
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2528804 ~ 2529999 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161810
tttaaaagtaAGCTTTATTTCCATGGCAACACTCAATTTAACTTGTTTAGCCAGTTTTATCTAGCCTATGTCATACAAGGAGAGAGATATGTAAACATCAAACAGAAACATCTGGCATAGGGGCTTAGAAAAAAAGCATCCCAGGTAATTtgatattacaattatatgcaATACAGCGCGTCTATGTGTAGGCCATCTGATTGGCAGAACACTGCATCTActaaaatggagagaaaaatgCCAGAGCGCCACCTACTGGATAGTGCATTTTAACATCTGTAAGTATGACTGATCAAACATTTCTATTAAGCAGCTTGTTGCATAATAAGATTCCTCCTAAATGACTGgtacagaaaacaacaacaacaacaacaacgtaaTGCCTGCACCATCACCACTGTGATACCTActaatgaaaaggaaaaaagtgctCGATAAGTGTGCTACaagatttattgaataattatgaGGAAAGCTTATATTAAAGAGATGAGGATTCTCAGCAAGGACCTGCTTCAAAAACGAAAATAAGAAGTCATTCGACACATTAGACATGTTATCACTTGCCACATGGAATGCATAACTGTTCAGAATTACTTCTTACTAGATGGATGTCAGCCAGCACAGAAACAACCTCAGGGTGTCAGCAGTAATCACAATAACATCGTTCGAACTCGTCAGTATGCAGCGGTCTTAATATGAGAACAATCACAGAAATAGCAGTCTCAAAATATTGATTGTCAAAGCGGTGAAAGGAAAGCGTGGATAAGGCCTGCTGCGGTGGTTAGGTTGTGCTAATAGTTGTGATTCCTGAGGCCACTTCTGTGGTACGCTCCTCTTCGATCAGTTGCAAAGCATTCTGGTCACTTGGAGACGGAGGAACAGACTCTGATTCGGCTGTAGCAGGTGTTACAGAAGAGCTGTCTGTGTCTGACTCTGACCTGAGCTCCGGACTCAGTCCCTCTCCCAAGGTCAGTCCTGCAGCTGACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161810 True 992 lncRNA 0.41 2 2528804 2529999

Neighbor

gene id symbol gene type direction distance location
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding downstream 518138 2000781 ~ 2010666 (-)
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding downstream 808689 1718035 ~ 1720115 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding downstream 824083 1684904 ~ 1704721 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding downstream 866177 1656548 ~ 1662627 (-)
si:ch73-341k19.1 LOC107551746 coding downstream 874277 1648367 ~ 1654527 (-)
LOC122360106 NA coding upstream 170322 2700321 ~ 2700949 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding upstream 369314 2899313 ~ 2915431 (-)
ascc3 ascc3 coding upstream 385656 2915655 ~ 3064578 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding upstream 1154119 3684118 ~ 3699070 (-)
csf3r NA coding upstream 1199143 3729142 ~ 3743612 (-)
G109503 NA non-coding downstream 5315 2523132 ~ 2523489 (-)
G109500 NA non-coding downstream 15237 2512775 ~ 2513567 (-)
G109490 NA non-coding downstream 127912 2400686 ~ 2400892 (-)
G109485 NA non-coding downstream 249149 2279016 ~ 2279655 (-)
G109482 NA non-coding downstream 254868 2273552 ~ 2273936 (-)
G109522 NA non-coding upstream 147204 2677203 ~ 2680338 (-)
G109531 NA non-coding upstream 278377 2808376 ~ 2808754 (-)
G109538 NA non-coding upstream 295429 2825428 ~ 2828623 (-)
G109544 NA non-coding upstream 312053 2842052 ~ 2842281 (-)
G109607 LOC107667969,LOC107661009,LOC107714403 non-coding upstream 813931 3343930 ~ 3418605 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 564643 1741120 ~ 1964161 (-)
G109287 NA other downstream 1646052 882459 ~ 882752 (-)
G109275 NA other downstream 1895907 632465 ~ 632897 (-)
G109600 NA other upstream 583843 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 1564758 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 2702212 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 3252668 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 3287041 5817040 ~ 5818618 (-)

Expression


Co-expression Network