G109544


Basic Information

Item Value
gene id G109544
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2842052 ~ 2842281 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161849
TTTTAGATTTCCATGCAgatgttataaaataatcaatttgtGAATGAGTTTTATATGAGCTTGAATAACAGGAATATTCTCTTTTATTTGGGTTCAGCATTCTCCAATCTCCAGTTAAAGTTAGATCTTTCAtataatcaattaatattttccTAGTTTGTGTATGAATTGTATCTATTTGAGTGGATCTGTCCAATATTGGGTCGAGGGTACAGTTAAAATCATCTCCA

Function

GO:

id name namespace
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU161849 True 230 lncRNA 0.30 1 2842052 2842281

Neighbor

gene id symbol gene type direction distance location
LOC122360106 NA coding downstream 141103 2700321 ~ 2700949 (-)
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding downstream 831386 2000781 ~ 2010666 (-)
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding downstream 1121937 1718035 ~ 1720115 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding downstream 1137331 1684904 ~ 1704721 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding downstream 1179425 1656548 ~ 1662627 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding upstream 57032 2899313 ~ 2915431 (-)
ascc3 ascc3 coding upstream 73374 2915655 ~ 3064578 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding upstream 841837 3684118 ~ 3699070 (-)
csf3r NA coding upstream 886861 3729142 ~ 3743612 (-)
LOC122360352 zgc:91890,LOC107559041,LOC107689180,LOC107688990,LOC107713919,LOC107726234 coding upstream 1317206 4159487 ~ 4160521 (-)
G109538 NA non-coding downstream 13429 2825428 ~ 2828623 (-)
G109531 NA non-coding downstream 33298 2808376 ~ 2808754 (-)
G109522 NA non-coding downstream 161714 2677203 ~ 2680338 (-)
G109509 NA non-coding downstream 312053 2528804 ~ 2529999 (-)
G109503 NA non-coding downstream 318563 2523132 ~ 2523489 (-)
G109607 LOC107667969,LOC107661009,LOC107714403 non-coding upstream 501649 3343930 ~ 3418605 (-)
G109614 NA non-coding upstream 782361 3624642 ~ 3625012 (-)
G109615 NA non-coding upstream 786527 3628808 ~ 3629417 (-)
G109638 NA non-coding upstream 866986 3709267 ~ 3717083 (-)
G109650 NA non-coding upstream 1048857 3891138 ~ 3891823 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 877891 1741120 ~ 1964161 (-)
G109287 NA other downstream 1959300 882459 ~ 882752 (-)
G109275 NA other downstream 2209155 632465 ~ 632897 (-)
G109600 NA other upstream 271561 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 1252476 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 2389930 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 2940386 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 2974759 5817040 ~ 5818618 (-)

Expression


Co-expression Network