G109607 (LOC107667969,LOC107661009,LOC107714403)


Basic Information

Item Value
gene id G109607
gene name LOC107667969,LOC107661009,LOC107714403
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 3343930 ~ 3418605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161947
ACCCATTGGAGTGCCGACCCCGTAGGCCTTGGAGTCTATGAGGCCTCCGATCTGCGTGAGGTTGCAGTTGCGCTGAGTGACGAATTCGATGGTGGTGGACTCCATAAGGAAAGCGTAATCAGAGGTGAGCACCCGTTCAATTCCTTCCTCGATGCTCTTCACCATCACCGAATGTCTTCGACTGCTCATGAACTCCCACATCTTATCATACGTGGAGATCTTGGTTTCTTAAAGAAGGTCATTGTAGCGCCATCCTCCACCACTCCATACTCTATCTTGGTCTGCTTGGCCAGGTCATCGGCCGAGTCAATTGGAGATTCCATTCTCTCCACGGTAAGAAAGGCGGCTAGGTTAGCCGTGTAGGAGGAGATGATGATTAGGGTTAAAAACCACCAGATGCCTCCTACTATCCTGGTAGAAAGGGCTTTGGGCATGAGCTCAGATCCTAGTAAAAAGGAGCAAAGATAGCAGTCAGGGTAAAGCAGTGATCACAATGTGAGGACCAGCACCAGAACCCAGTCCAGACACAACAACTAGTTGCAGGGAAAGGCCTTGCCTGCTGACAACTGGGATGACATATCTATGCCAAAGTCAACTACGGTGAAGGTGGgaattcatttatgttttaggAGAATTTATGTGGTCAAATTTAATTAGATTACAGACTCTCAGATTTGTATTATATCATAAAGGGCTCATGATTTGCTTCCGTCTTTGAATTGCCCTACACTCTTCAATCCATTTGGCTTGTGGGCAAAAGCCAAAATGAAGAACCATTTTATGTCACAACCCACGTATAATTTTCTGTTATTCCTTAATCAAGTTGTCACCGTGGCCATGCAGAGGAAATTAATTGATGGGGAAAAGTCGGGACAATAACTAGTTGTACTAGGAGGAGATGTCAGAGGACAAGAGCACAGGGAAATAACTGGCTCCTCTTCTCAAGTTCTATGAGTCAGCTGTAAGCTTTGATCAGGCACACTGAGTCCATGGCAAAACACAATGGACTGTTGAAAAGATTAGCCGTTACATGAATTACAATTGAACTGCAAACGTGAGTTCCAATCAGGCCTCAACAGACTGGTAATGCTCTAGTGACCTGTCAATCAAGAGTTTGGATATATAACTCTAGATCCCAGACAGCCTGAACAACCAttgaaatagaaagaaagagagaattaCTCTTTCCCTGTATATACTAGCAATTCAGTTGTTAAAGCTGATATGTACATTTGTTCATCGTTGATGCTAAAAAACATTCTCCTCTTCCATCAAAGACAACCTGAAGTACAAACATTGTGGTGTTCCGTTCCAACGTGTGGCTAAATCAATTGTGTGCGTTTTGGAGAGGAATACCTGCTTCTCCAAACAAGTAGTTGGGCACAGTGAAGAAGGGGCAGGAGGAGTGTATGCAAATCTAGAGTTGCATATTTTACACATATCTCTTTTAAACAAGACTTGGCAAAATCGATCAATTAGCAGAAAAGGTGCTTTAATGCCCACAACCACAgaacattgaaaaatataaaacgaaAACTATCCTCAGAAGAAAGTTGAATGCTGTTATTTGAAAGTATCACCTGGACCATTTGATCAGGGTGACTTTATATAACCTGGTTGGGGCTGACTGTCATGTACCCAAGGTAACGTCATGTCCAAGCACGCCGTCCCACAGTTTTCTGGGGGCTGACAAGCCATGGGCAGGGGAGCCTCTCTACAGTGTAGTATTACTCATTCATCATGAGACATGCAGACAGTCAACATACACAATCCCTGCCCGTTTAGCCCTCAGCCTAATGCCACATCTTCTCTTCCAAACTAACAAAGGAATCTGAACAACTGACAGTCCCAATGACACCCTATAATTATGTTGTTATGGGGTGATGCTGTTGGACAATAATTAGTTTGACAGGAAATAATAGGTCTACCTCCTTTTTGCTATGATCCAAACACGCTAGCGTATGACTTTTAATGACCTCTGCTTTCTGAGGATATCTTATTCCTAGGTAAGAGTTGCAATCCACAGTGCCAATCGGATAGTGGGATTCAGGAGGTTGCCTAGACACACTATGATGCACCCACATTTGCAGTGAAGCATATAAGATAGGGGTTCCCAATACTGGTCCTTGAGAACGTCCaacactgtacattttaaatgtcacccTCATCAAACACATCTGATTCAACTCATTGTCTCATTAGTAAGGACTCCAAGACCTCAAATATATGTGTCAGATAAGAGGGACATCAACAATATGCAGTGTTGTTGGTTCTCCAGGACTAGGAATGAAAACCACTGATTTAGGAACATCATTCATACAGCTGAATATCACTTGTGCCTCTTGTTCAGAGGTCTTTAGAAATGTACTTGGGAAcacactgtcctgcagagtttagtttcAATTCTTATCAAGCCCATTGAACCAGCTAATCGAGCTCTTCAGGACTACTTTAAATTcccaggcaggtgtgttgaaaCATGCTGGAAATAAACTTTGAAAAGACAGTTGGGATGCAGAAGGAAAGTTGAAGACCTCTGCTCTAGTAGGATGCTGACTGCATATGGCCCTTTAACTCTTTAGCATGCTCTTTgattcattctttaaaaatcactagACAAATCGCTCTAACAACTAGAACAGCTAGGCAAAAATATCTGCaatgtttcttcatttttgACATTCAATATGAAGACAGATGTCCATGCTATCTACATTGCAAAGAGCCGGTGGCTGGTTTCAGCCAGTCCTTAAATACAAATCTATTTCACAATGTAGATTTTGCAAAGACTCACAATGCTAATGTTATATGGCAATCCATTTCCAACTGAACCATTCCATTTAACAGATGCAGTGCAGATTCAAACATTATCCATGCTATTTTGCAAACGAGGGTCTGATTGCTCTTTTGATTACTCAACCAAATATCATTATGCTATTCTGATGCAACACATACTAATGCATGCAGGTTACATGTGACTTTGTCCTTCAATCACCATAGGCCTTTCTCAATCTCAAACATTTTCAGCTGAGAAGATGTGGCATCAGGATTTggtagggttagagttagaagCCAAGAATACATATGGCTTTAGACACAAGACCAGTAATCTGTCTTTGTGTCATTCTGCCACTTTTTTGCACATGAAATTGGACTTACCTGCTCAGAGCCCCAAAGAGCGAAGACAGTGGTGGTTATGGAAAGGTTTGCATGCAACTAATGATCCCCTGATCCAACACCCACCGATAAAAACTTTCAAGTCCCACACAGtcccattcatactattggccAGCAACCAATTTGCTTCTAGAACTACATGCACAGAGGCACCCATGCATCACAGAGGGCCTGACAAGAGCAAGTTGGGACCCCCAGCAAAAGAGTGGGATGTGTGCTAAGGGGGGCAGGCAGAGGCGTCTACCTTGCTGCATGAGAGCTCCAACTCCGAACCAGAAACTATTTAGCAGGGTGAAATTGTTTTCCACCACGTCCGAGTCGGGGTTGCACGGGTGGGGGTTATACCATTCGTAGGGGCTAAACCTGTGGCaagcaacacaaaacacacaaatacattttagttcaaATAaggaatgtcaGGTCTACCTATAAAGACACAAGGAGAAAGTGACAAGTTAATAAACATCAGTTAATTAGTTCTCTTGAAGAATCTATCTGTGTATTTCTTCACAAATGGTTAAAAAATTTTCTTCGTtgatgtaataaataaataagttacatGTGGGTTAGACCAGTTTGTTcatttcaggtgtttttttctATTCCAGAAACTCTCATATTCATGTCAAAGGCAACCATGCTTATCAATGCATAAGAAAAACCAGACATTTCTGATCTTATGAGCCATGGTCTGAGTGGAGTTACTAGACAGAACTTTAAGGGACAGAttacctaaaaatgaaagtctgtcatcatttactcacccttaagttCTTCCAAgtctgtatgagtttctttcgaAGAATGTGGATAATCAGATCCTCACTGACTTCGATAAAAACCATTAACTTTGGAgttaataaatgatgacagacttttcatttttgggtaaactatcccttttatataacaataagtATTAAGATGCAAGATAccacacacatatgcaaaagCATGCTCACTGCAAATCGATGCTGTGTTGGATTGTACTATCagtttgaaaatgtgttttattagcatttaattattcaagCCATTTTTCTCATCTCACACATACAAAAATGAACATGTCTCCAACTAcattaaagcacatattaagtGCAAACACTGAACAATGAACAGTCTAACAatgtttttggtaacactttattttacggttacacatATTAATCGTTCATGCATATCATTTgaatattagcaatttattagtgctaattaagcacatattaatgcttcaTTCTACACAACCTTATTCCACATCCCTGGTCCCACCCAATACCTAAagttaacaactaccttactgaCTATTTATgagcaacaaattaaaaaatgattgagGGAAAAGTTAATAGTTACCAAGCGTTACCTATTCTTCTGTAAAGTGTGACCATGTTTTTACACACCTCATGGACTTCAGGTGGTGGGACTGAGCCTAtggattattttatataatttataaatgtataaacatattttatctGTGCAcaacatgtatttacatatatttatgtatcaCTGTGCCTTATATCctagcattaaaaatacagctggGTTCAATAGATAACAACAAAGATGTATATAAAGATAAAGGTATATAACAGATATACATAAGGCCTGGAACAGTCCAAGCCTTGCAATGCTTCTTGTACTTTATTAGCGTACTTCTTCTTTTAATAGTCAAAATAGTTTAATCTGTAGTTATCCCAGAATATCCATTTAAATGGATTCATTTAGATGCCCATTTCAGAAGATCTAGTCAATTCCATCATCTCCACACCCCAATCCCTCGTACTGTGCTATCTCTCTCCCACATTGAGACTTCCCATTTACTCCAGCTAAATATAAGTGACATTACATTAGTAAAGGTTGATTGGGCGACAATTAAGCATTGTGACCCAATTCTGTTTGTGCTGAAGTagtggaataaaaaaagcatctaCAGGCTTTTCAAGAGTTGAGCAATCAGATACCAAGGAATTATTTGTCTCAGCTATTTTTCATTCTCTACCacaactgtaaaatgaaaacagaaattaTTGACTTTCAGAGAGTAGAGTACACAACATTTTCTGCATATGAGTCTATGATAAATTGATTGCTGTGCTCTCTTTAAATAGTGCTTCTGtatcaaacaaaaaataaaaataaaacattgtcaAATATGCTCTGCTCGAAAACCTGGTGAAGATCATgcactaaaatatttcaatatattacaTACCTatatcttccttttttttttttttttttttttatttttttttttttttttttttt

Function

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161947 True 5454 lncRNA 0.39 4 3343930 3418605

Neighbor

gene id symbol gene type direction distance location
ascc3 ascc3 coding downstream 279352 2915655 ~ 3064578 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding downstream 428499 2899313 ~ 2915431 (-)
LOC122360106 NA coding downstream 642981 2700321 ~ 2700949 (-)
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding downstream 1333264 2000781 ~ 2010666 (-)
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding downstream 1623815 1718035 ~ 1720115 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding upstream 265513 3684118 ~ 3699070 (-)
csf3r NA coding upstream 310537 3729142 ~ 3743612 (-)
LOC122360352 zgc:91890,LOC107559041,LOC107689180,LOC107688990,LOC107713919,LOC107726234 coding upstream 740882 4159487 ~ 4160521 (-)
LOC122360353 LOC107713904,LOC107689171,LOC107559021,LOC107688989 coding upstream 785076 4203681 ~ 4243342 (-)
LOC122360932 grik3,LOC100334689,LOC105019312,LOC106605119,LOC102778608 coding upstream 1093369 4511974 ~ 4614017 (-)
G109544 NA non-coding downstream 501649 2842052 ~ 2842281 (-)
G109538 NA non-coding downstream 515307 2825428 ~ 2828623 (-)
G109531 NA non-coding downstream 535176 2808376 ~ 2808754 (-)
G109522 NA non-coding downstream 663592 2677203 ~ 2680338 (-)
G109509 NA non-coding downstream 813931 2528804 ~ 2529999 (-)
G109614 NA non-coding upstream 206037 3624642 ~ 3625012 (-)
G109615 NA non-coding upstream 210203 3628808 ~ 3629417 (-)
G109638 NA non-coding upstream 290662 3709267 ~ 3717083 (-)
G109650 NA non-coding upstream 472533 3891138 ~ 3891823 (-)
G109716 NA non-coding upstream 522352 3940957 ~ 3941639 (-)
G109600 NA other downstream 213951 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 1379769 1741120 ~ 1964161 (-)
G109287 NA other downstream 2461178 882459 ~ 882752 (-)
G109275 NA other downstream 2711033 632465 ~ 632897 (-)
G109724 LOC107084717,LOC106511825 other upstream 676152 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 1813606 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 2364062 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 2398435 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 2483972 5902577 ~ 6184133 (-)

Expression


Co-expression Network