G109650


Basic Information

Item Value
gene id G109650
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 3891138 ~ 3891823 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU162009
aagcacagggtatgccctgccccctcaggttgcgggcacactcaacaagaagtgttgcatcgtcctgggcgttGGCTCGTGGCGCCTCGCTGGCAGATATTTGTAGAGCTGCAGGCTGGGCGACCCCTAACACgtttgctagattctatagcctacgtgtggaaccggtatcctcctgtgttctcacctcaaacgggtagaagcactgagaggcccggtttcgggtcggcttgttaaccgctccagagcgtccacacagtagaccctgtcgagctcctccattcccctcggcagccagatgttgcggagcatctggcgccaggccctctcgatgaatccgtgagaaccggtgagggctgggagccatgtaaagtaccccaagaggactttatgtgtgtatttccacggcatagcctagagccccgtgtttccccggcagaccttctgcccatccaagagggttcaatcacctcccattttccatatgcaaactgaaatattgtccatatgcgtattcgttccgagacctcctacgggaaggctggacttccgcacgtccctgttcgctagaacgtgggacgttccccagtgttccagtcttacgaatgggtagtattgtagctggcttcttgtggtcgaGCCtcggcctacgccgatagactgagggggcttgtgggctcccacag

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU162009 True 686 lncRNA 0.57 1 3891138 3891823

Neighbor

gene id symbol gene type direction distance location
csf3r NA coding downstream 147526 3729142 ~ 3743612 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding downstream 192068 3684118 ~ 3699070 (-)
ascc3 ascc3 coding downstream 826560 2915655 ~ 3064578 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding downstream 975707 2899313 ~ 2915431 (-)
LOC122360106 NA coding downstream 1190189 2700321 ~ 2700949 (-)
LOC122360352 zgc:91890,LOC107559041,LOC107689180,LOC107688990,LOC107713919,LOC107726234 coding upstream 267664 4159487 ~ 4160521 (-)
LOC122360353 LOC107713904,LOC107689171,LOC107559021,LOC107688989 coding upstream 311858 4203681 ~ 4243342 (-)
LOC122360932 grik3,LOC100334689,LOC105019312,LOC106605119,LOC102778608 coding upstream 620151 4511974 ~ 4614017 (-)
LOC122360926 LOC107598923,LOC107756920,LOC107732735,LOC107660307,LOC107565651 coding upstream 903987 4795810 ~ 4799825 (-)
smpdl3b smpdl3b,LOC107744599,LOC107703919,LOC107732739,LOC107688972 coding upstream 997660 4889483 ~ 4894107 (-)
G109638 NA non-coding downstream 174055 3709267 ~ 3717083 (-)
G109615 NA non-coding downstream 261721 3628808 ~ 3629417 (-)
G109614 NA non-coding downstream 266126 3624642 ~ 3625012 (-)
G109607 LOC107667969,LOC107661009,LOC107714403 non-coding downstream 472533 3343930 ~ 3418605 (-)
G109544 NA non-coding downstream 1048857 2842052 ~ 2842281 (-)
G109716 NA non-coding upstream 49134 3940957 ~ 3941639 (-)
G109729 si:dkey-283b15.4,LOC108410633,LOC107558621,LOC107559044,LOC107726254,LOC107688991,LOC108268159 non-coding upstream 261894 4153717 ~ 4155712 (-)
LOC122360497 NA non-coding upstream 288584 4180407 ~ 4181293 (-)
G109743 NA non-coding upstream 495578 4387401 ~ 4387701 (-)
G109760 NA non-coding upstream 921496 4813319 ~ 4814496 (-)
G109600 NA other downstream 761159 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 1926977 1741120 ~ 1964161 (-)
G109287 NA other downstream 3008386 882459 ~ 882752 (-)
G109275 NA other downstream 3258241 632465 ~ 632897 (-)
G109724 LOC107084717,LOC106511825 other upstream 202934 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 1340388 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 1890844 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 1925217 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 2010754 5902577 ~ 6184133 (-)

Expression


Co-expression Network