G109819


Basic Information

Item Value
gene id G109819
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 4818807 ~ 4819736 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU162253
GTTCGTTGCTCCGCTGCACCAGTCCGATCAGTTTGCTCTCCCTCACATCATTCAGCAGTGAAGCGCACTCCACAGCTATGGTGCAGTTTTCTCCTTTCTCCAAAGTCTCTTGGATTGCCACGGACTGGTCCATTACTCGCAGCGAGCCTTCACGCGCAAGAAATCGCATTTACGATCATTTTACGTCAATAGGGCTTCAAAGTGTGCCGGATAACGGTCCGAAGCGGTTTACCGTCTTCATGGTTTCCTCATGGAGTCCAGCGACTTCCCGTCCGCTAGTGCCACGCAGCAGATTCAAGACTTCACGCCCAGCCCCCGAATAACAGTTTTATCACAGCGTCTGCGGTCGCTCAATCGACGCTATTTCTGACTTTCTCTGCTTTTGACGCGTTACTTTTCTCCTGGCCAAGAAGCGGCGTCAGAGACTGTTGAAACTCCAAACTTGTTGGAGGACTCGGATCCCGCCCGTCGCTTCCTCACGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162253 True 482 lncRNA 0.53 2 4818807 4819736

Neighbor

gene id symbol gene type direction distance location
LOC122360926 LOC107598923,LOC107756920,LOC107732735,LOC107660307,LOC107565651 coding downstream 18982 4795810 ~ 4799825 (-)
LOC122360932 grik3,LOC100334689,LOC105019312,LOC106605119,LOC102778608 coding downstream 204790 4511974 ~ 4614017 (-)
LOC122360353 LOC107713904,LOC107689171,LOC107559021,LOC107688989 coding downstream 575465 4203681 ~ 4243342 (-)
LOC122360352 zgc:91890,LOC107559041,LOC107689180,LOC107688990,LOC107713919,LOC107726234 coding downstream 658286 4159487 ~ 4160521 (-)
csf3r NA coding downstream 1075195 3729142 ~ 3743612 (-)
smpdl3b smpdl3b,LOC107744599,LOC107703919,LOC107732739,LOC107688972 coding upstream 69747 4889483 ~ 4894107 (-)
limd1a LOC107703922,LOC107744601,LOC107598949,LOC106579350,LOC107732724,LOC107688969,LOC107756905,LOC106605519,LOC107562399 coding upstream 86121 4905857 ~ 4929011 (-)
lars2 lars2,LOC107598928 coding upstream 109422 4929158 ~ 4972573 (-)
clec3ba LOC107562407,LOC107732738,LOC107756909,LOC107689022,LOC107703910,LOC107576254 coding upstream 171242 4990978 ~ 4995038 (-)
fez2a fez2,LOC107756910,LOC107703924 coding upstream 175437 4995173 ~ 5004441 (-)
G109760 NA non-coding downstream 4311 4813319 ~ 4814496 (-)
G109743 NA non-coding downstream 431106 4387401 ~ 4387701 (-)
LOC122360497 NA non-coding downstream 637514 4180407 ~ 4181293 (-)
G109729 si:dkey-283b15.4,LOC108410633,LOC107558621,LOC107559044,LOC107726254,LOC107688991,LOC108268159 non-coding downstream 663095 4153717 ~ 4155712 (-)
G109716 NA non-coding downstream 877168 3940957 ~ 3941639 (-)
G109820 NA non-coding upstream 1819 4821555 ~ 4822686 (-)
G109824 NA non-coding upstream 35918 4855654 ~ 4858398 (-)
G109825 NA non-coding upstream 40512 4860248 ~ 4861031 (-)
G109836 NA non-coding upstream 44681 4864417 ~ 4864679 (-)
G109887 NA non-coding upstream 269165 5088901 ~ 5089304 (-)
G109724 LOC107084717,LOC106511825 other downstream 723303 4094757 ~ 4095504 (-)
G109600 NA other downstream 1688828 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 2854646 1741120 ~ 1964161 (-)
G109287 NA other downstream 3936055 882459 ~ 882752 (-)
G109275 NA other downstream 4185910 632465 ~ 632897 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 412475 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 962931 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 997304 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 1082841 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 1209472 6029208 ~ 6034777 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G269262 NA non-coding CI01000065 null 2855664 ~ 2856587 (-)
rainbow trout (Oncorhynchus mykiss) G268899 NA non-coding NC_048567.1 CM023221.2 50248452 ~ 50251001 (-)