G109887


Basic Information

Item Value
gene id G109887
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5088901 ~ 5089304 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU162380
CTTCCAGTGAGGAGTGCAAAGACTCATTCTTTACTAGGACTGTTTTCCACATGCTAGAATAATAGTAGTTATCAAAAGTATGAAATGACACAAATGGAAGTATGGGAATTATGTAGTGACTAAATTTCCCATATCTGAGCTTTTTCTTTGTCTGGATTCCAGCTGTGCTCACTTTGGGTATGATCTCAAACAACTGTACATTACGGGggcttttattcattattagaGAAGTTTTTACGATGCTGTTTAACACAACTGTgttcagcattaataatatgcatatgcaataaaatgcagCAAATCCGCATATCTTCTAAAGCACcagaagactgaagtaatgatgctaaaaagaTAACCAGAAAGATAACTTCCTCTACACACGAAAAGTATTAGTGTGCATGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162380 True 404 lncRNA 0.36 1 5088901 5089304

Neighbor

gene id symbol gene type direction distance location
adcy3a adcy3,adcy3a,LOC107688975,LOC107703925 coding downstream 42018 5027170 ~ 5046883 (-)
wdr26a LOC107598934,LOC107756916,LOC107562420,LOC107688974,LOC107732721,LOC108270098 coding downstream 63577 5012577 ~ 5025324 (-)
fez2a fez2,LOC107756910,LOC107703924 coding downstream 84460 4995173 ~ 5004441 (-)
clec3ba LOC107562407,LOC107732738,LOC107756909,LOC107689022,LOC107703910,LOC107576254 coding downstream 93863 4990978 ~ 4995038 (-)
lars2 lars2,LOC107598928 coding downstream 116328 4929158 ~ 4972573 (-)
lyplal1 lyplal1,LOC797125 coding upstream 1207 5090511 ~ 5095595 (-)
tgfb2 tgfb2,LOC107598937,LOC106584161 coding upstream 49390 5138694 ~ 5170630 (-)
rrp15 rrp15,LOC107598955,LOC107737032,LOC107703929,LOC107689025 coding upstream 84346 5173650 ~ 5176812 (-)
ppp1r8b ppp1r8b,ppp1r8,LOC107564517,LOC107689150,LOC107688979,LOC107713931 coding upstream 266683 5355987 ~ 5360418 (-)
LOC122361376 NA coding upstream 270206 5359510 ~ 5359679 (-)
G109836 NA non-coding downstream 224222 4864417 ~ 4864679 (-)
G109825 NA non-coding downstream 227870 4860248 ~ 4861031 (-)
G109824 NA non-coding downstream 230503 4855654 ~ 4858398 (-)
G109820 NA non-coding downstream 266215 4821555 ~ 4822686 (-)
G109819 NA non-coding downstream 269165 4818807 ~ 4819736 (-)
G109891 NA non-coding upstream 88027 5177331 ~ 5177535 (-)
G109906 NA non-coding upstream 101046 5190350 ~ 5190705 (-)
G109907 NA non-coding upstream 101477 5190781 ~ 5191350 (-)
LOC122359853 NA non-coding upstream 109487 5198791 ~ 5207419 (-)
G109914 NA non-coding upstream 157934 5247238 ~ 5321296 (-)
G109724 LOC107084717,LOC106511825 other downstream 993397 4094757 ~ 4095504 (-)
G109600 NA other downstream 1958922 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 3124740 1741120 ~ 1964161 (-)
G109287 NA other downstream 4206149 882459 ~ 882752 (-)
G109275 NA other downstream 4456004 632465 ~ 632897 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 142907 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 693363 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 727736 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 813273 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 939904 6029208 ~ 6034777 (-)

Expression


Co-expression Network