XLOC_006704 (BX005005.2)


Basic Information

Item Value
gene id XLOC_006704
gene name BX005005.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31052536 ~ 31061816 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012913
atttaaacaataaatactttaataaatagtAACAAATTCTctcatgaattaattaattaaataaataaataaaatttatatttaaaaaagggtATTTCACCATACAGAAACAATTTTTGTGGGAAAAATGGAATCAAGGACAATTTTATCAGAAAAATAtacacagtaataataataaaatggtcAGATGGATGATCTTTGTTTTGTCTGTGTAGGGATTTTTGCAACTGTGCAGGCATGTGTGTTTTGTGGAGGTTTTGCTGGAGACCCAGGAGCTGTCGAGTGTGATCATCTCTCTCACTCTACTGTGGGATCAGTGCAGCTCTTCATGGAGACAGCAGGCGTCTCGAGTCCTCAGATCAGTGTCTGCGGCACAAGCTCACAACACTGTATCTGCACTGCAAGCTAGCAACTGCATGAAGATCTGCATCCAGAACATGCATAAGATCAGCGAAGACGTCCCTGCTCATGTTCTCGCTGAGGTGGCTGTGAGTGTTTTCAGCTTCGTGAAGGACTCCTATGCTATCAACCCTGCTCTTTTTGAGGAGTTTGAGAACAACGATGGCTACGACATCTTACAGACCATCATATTACGCTGTGAGGAGGAAGTGACAGCGGAGCACTATCTGGCTGTTCAAGACCTTCTGGGCCTCATCGGGTCATTCACACTTTTTGGCAAGACAGAATTAAAGGTGGCCATATGTGTGAGCAACCCCCAACCCTCGAACTTCAGGTTCGACCCCACCCTGACTACCGGTTCAACAGTGAAGAACCTCACAGCTTTTAAAATCATCCAATCCTCATTTATGCGCTCAAGCAACACTGTGATCTGCAGCCAAATCCTGCGGACCATCCAGATGATCTGGTCTTGGGAAAAGGCAAACTTTTTCCTGTTGGAGTGGACTCTGCAGTCTCTGGCTCAGCTGGCAGAGTGTGTGTGGCAAAAATCGCCACCCGTTCACCTTATTTTCTTCGAACTGCTTGAGACGGTGATTTTCCAGCTTTCCTACATCCCACACGAGACCCTCAAGAAGGTCCAAGCTATGGTTAAACAAGGCTCCTCGGGGATATTCAATGTCGCAGCTCTGGATTGCTTCTATAGACTCATTATGAACAGTGGATTGCTGTCTGAGGTGCTGAGTGATGGAGGACTGATGGAGCAACTGCTGTTTGAGCTTAAAAGAAGGGCCAAGATAATCCGAAAGGCTGGTGTTGCTGGTGAGTTTTCAGATTTACTCTGTTttataaattacaaaaacaagACAGTTTGAAATCTAGTAGCATCATCCTGATTTTTTGAAATCTTATTTACTAACAGTAAATGAGGACGAAGAGAAGGCTGATGACTATCAGAAGATGTTGACAACCAACATTTTGAACGTGGTTGCAGCCCTGGCCTTGCAGTCAGTCAGAAACACTGGTTGGTGGAATAATTTGTTTTGTAGCATATTCTCTTTGCTggtattaaagagatagtttaacTACAAATGAAAGTTTTTCTTGTTCTAAACCATTAAATGCCATAATATTAGTTTTTTCCAccatagaagtcagtggttacagatttctaacattcttcaaaatatctttttttgtattcaataggacaaaaaaatttaaatttgtatGGAACAAGCAAAGGGGAAGTAAACGAtgactgaattttt
>TCONS_00012914
AGGCAATTGTGTATTCAGTTTACTCTAAGTGTTTTCTTTAGAAAAGCCCTTTTGTCATTGATTTATTGCACAATTTAGTTTTCAGCCCATGTCATGGAGAGCATTCCTCTCTTTAACTCTATCCTGTCTAGTCATGTTTTGACAGGtcgttgttgtgtttttttgccAGGAGGTTGGTGTTATGATCAAGACGGGCCTGCCTGCGGCGCTAGTCAAATCTCTGTATCTGTTTGTAGCTTTGCCTCCCCGAAAAGAGAATTCTGACTCTTCACCAAAAGATGTCAAAGAGGATCTCAAATGTTCTTTTCAGGACACTCTTATTCAGGGATTTTTGCAACTGTGCAGGCATGTGTGTTTTGTGGAGGTTTTGCTGGAGACCCAGGAGCTGTCGAGTGTGATCATCTCTCTCACTCTACTGTGGGATCAGTGCAGCTCTTCATGGAGACAGCAGGCGTCTCGAGTCCTCAGATCAGTGTCTGCGGCACAAGCTCACAACACTGTATCTGCACTGCAAGCTAGCAACTGCATGAAGATCTGCATCCAGAACATGCATAAGATCAGCGAAGACGTCCCTGCTCATGTTCTCGCTGAGGTGGCTGTGAGTGTTTTCAGCTTCGTGAAGGACTCCTATGCTATCAACCCTGCTCTTTTTGAGGAGTTTGAGAACAACGATGGCTACGACATCTTACAGACCATCATATTACGGTAAAATACATCACTTTATTTGAAAAACCATCAATGATAGATAGGATTATCAGCAAATATTGCAGATATGAAACCACCTCCAGAAAGCGCTTGTATTTTAGGTACTTTTCATTCCTTATTttcatctctctctttcttcctcTTATTCTCAGCTCTTTCCTGCTGCAAGTTTCTTTTTGAAAGCTGCAGAGTTCAATAATTAAAGAGCTCGTAATGAGATCAGCAGTAAATTGAGCTCAATTACATTACGGATCATGCCAGCTCTCTCTAACTCACTGTGTGTCTGCTCTTCCTCACAGCGAGGGTCAATGTAGGACAAGACCGCTTTCAGTCAACAATGGCTCTCATTCActatgtgtgtctatatgtgcTTTTATGTAAAGTCTGTAGGTGGTGGTTATTTTGTTTGTGCATAGATTGTGCATTGTATCTTTTTTGCACACTTAGTATATAAAAGTGCTGCTTCCTTAATGGCAAAATAATTTTGGGTTTaagtctttaatttaattttatgttatgaCCCTTAATGGAAATATGTCTAGGAAATTAAACAGAGCAACATTGAGATGACCAAAATAATAAGTGTTTTTTGGTTCGAGTAAGTTCAGAGTGCATATTTTCTTCTTTAGAGGAATGGGAGGA
>TCONS_00012915
GCCAACAAAGTGTATGTactgtgttgttgttttagaataacaatttgtttttctaatattttataaGGTGTCAGAGAGTGGCAGTGTTCTTGATGATCTGGATCTTCAAAGCTTGGCACTGCAGGTTGGAGAAGCTCTCGTCTCTCATGTACAGCAGAGAGTGGCAGAGAAGCCTGCAGAGGAAGCACGATATGAACTGGAGCAGTTTtttcagaggtcagaggtcaaaagCAACCAAGGATGGCTTCTGCTTAAATCAATATCTTTCTTGTCCAACAGAGATACTGAGGTTGGTGTTATGATCAAGACGGGCCTGCCTGCGGCGCTAGTCAAATCTCTGTATCTGTTTGTAGCTTTGCCTCCCCGAAAAGAGAATTCTGACTCTTCACCAAAAGATGTCAAAGAGGATCTCAAATGTTCTTTTCAGGACACTCTTATTCAGGGATTTTTGCAACTGTGCAGGCATGTGTGTTTTGTGGAGGTTTTGCTGGAGACCCAGGAGCTGTCGAGTGTGATCATCTCTCTCACTCTACTGTGGGATCAGTGCAGCTCTTCATGGAGACAGCAGGCGTCTCGAGTCCTCAGATCAGTGTCTGCGGCACAAGCTCACAACACTGTATCTGCACTGCAAGGTCAGCAAAGACCAGAACATTCTTCATCCATCCGAATGTGTCTTATTAGATGATGTTTTTCGCAATAAATGGTTTAGGTAATAGGTCTACGTAATATCtatttttatcaacacatttattttgttttggctAAATGTGGATAGGCACTGTATGAACACTGTCAGATGACCATAATATTGATTTACTTTCACATGATGCTGATTTGAGTTACTGAGCTGTGCCAGATCTCTGATTGCATAACATTTTGGTTTTAGACATTTACTGAGTGTAGACAGGGTTGCAGTTAAATGTTGAGCACCCTTTTTGATGGTCCTTGGTCTAGGACTAGTAGCAATAGTAGAG

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0065009 regulation of molecular function biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0031267 small GTPase binding molecular_function
GO:0019899 enzyme binding molecular_function
GO:0051020 GTPase binding molecular_function
GO:0008047 enzyme activator activity molecular_function
GO:0060589 nucleoside-triphosphatase regulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012913 False 1667 lncRNA 0.41 4 31052536 31060030
TCONS_00012914 False 1347 lncRNA 0.41 3 31057365 31061033
TCONS_00012915 True 974 lncRNA 0.42 4 31059284 31061816

Neighbor

gene id symbol gene type direction distance location
XLOC_006703 BX005005.3 coding downstream 1380 31042514 ~ 31051156 (-)
XLOC_006702 wdfy4 coding downstream 27031 31024711 ~ 31025505 (-)
XLOC_006701 wdfy4 coding downstream 34576 31015547 ~ 31017960 (-)
XLOC_006700 wdfy4 coding downstream 44261 30985047 ~ 31008275 (-)
XLOC_006699 CR762493.2 coding downstream 180097 30855319 ~ 30872439 (-)
XLOC_006705 BX005005.1 coding upstream 14017 31075833 ~ 31075947 (-)
XLOC_006706 NA coding upstream 27770 31089586 ~ 31092400 (-)
XLOC_006707 NA coding upstream 41091 31102907 ~ 31122838 (-)
XLOC_006708 CR931802.2 coding upstream 64633 31126449 ~ 31127046 (-)
XLOC_006709 mapk8a coding upstream 85702 31147518 ~ 31167461 (-)
XLOC_006471 BX537274.2 misc downstream 20787631 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 30226311 825904 ~ 826225 (-)
XLOC_006698 NA non-coding downstream 240353 30808963 ~ 30812183 (-)
XLOC_006693 CT025887.1 non-coding downstream 420317 30632105 ~ 30632219 (-)
XLOC_006691 NA non-coding downstream 481393 30568567 ~ 30571143 (-)
XLOC_006710 CR931802.1 non-coding upstream 131669 31193485 ~ 31205193 (-)

Expression


Co-expression Network