G109907


Basic Information

Item Value
gene id G109907
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5190781 ~ 5191350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU162406
CCAGAGAAACATACTCATTCATCCTCAATATATAGGAATATGAAAATGTGATCGTATGTATTTTTGCTAGAAAACCacactttaatgcattttattgcaacATTTGTGCCAAGTAAATAGTTGTCGTTTAAAGCGGTAAAACCCCATTAACAGCATTATAATACACACCAGGCCTCTTTGAGATTAGAGCGCGTTATCGTAAATTAAGACTAAACAAGACATTCATCCTTGTTCTGCATGAAGAATGAAATCGCTAAGCTGTGGATGATTTGGCTACTGCTGTGGATGATATGATTTCCACTTCTTTCAGCCAAAATAAGAGCGAATTAAAGTATACAAGCACATGCTCGTAGGAGAACAACAAGAGATAGCAAGCAGCGGCTCAAGACCTGTGTGATAGATGCGTGATCCTCATCGTGTCCCTCTGAACCGCATTAAAGCGTCTGTTTAATGATTGACTTTCTAATGAAAGGCTTGATGAAAGCACTTGACAGTTAGCAATGCTATAAGGTTTCTGAAAAGATATGTTTACCTGAGAAAGAATATTTATTctagcacagaaaaaaaaga

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU162406 True 570 lncRNA 0.37 1 5190781 5191350

Neighbor

gene id symbol gene type direction distance location
rrp15 rrp15,LOC107598955,LOC107737032,LOC107703929,LOC107689025 coding downstream 13969 5173650 ~ 5176812 (-)
tgfb2 tgfb2,LOC107598937,LOC106584161 coding downstream 20151 5138694 ~ 5170630 (-)
lyplal1 lyplal1,LOC797125 coding downstream 95186 5090511 ~ 5095595 (-)
adcy3a adcy3,adcy3a,LOC107688975,LOC107703925 coding downstream 143898 5027170 ~ 5046883 (-)
wdr26a LOC107598934,LOC107756916,LOC107562420,LOC107688974,LOC107732721,LOC108270098 coding downstream 165457 5012577 ~ 5025324 (-)
ppp1r8b ppp1r8b,ppp1r8,LOC107564517,LOC107689150,LOC107688979,LOC107713931 coding upstream 164637 5355987 ~ 5360418 (-)
LOC122361376 NA coding upstream 168160 5359510 ~ 5359679 (-)
rpa2 rpa2,LOC107713930 coding upstream 175982 5367332 ~ 5379962 (-)
tpbgb LOC107688980,LOC107725281,LOC107713928,LOC107713927,LOC107689178,LOC107559023 coding upstream 227123 5418473 ~ 5420640 (-)
bckdhb bckdhb,LOC107688983,LOC107689156,LOC107559046,LOC107569448 coding upstream 317267 5508617 ~ 5559896 (-)
G109906 NA non-coding downstream 76 5190350 ~ 5190705 (-)
G109891 NA non-coding downstream 13246 5177331 ~ 5177535 (-)
G109887 NA non-coding downstream 101477 5088901 ~ 5089304 (-)
G109836 NA non-coding downstream 326102 4864417 ~ 4864679 (-)
G109825 NA non-coding downstream 329750 4860248 ~ 4861031 (-)
LOC122359853 NA non-coding upstream 7441 5198791 ~ 5207419 (-)
G109914 NA non-coding upstream 55888 5247238 ~ 5321296 (-)
G109942 cyp4t8,LOC107559042,LOC107703932 non-coding upstream 155055 5346405 ~ 5347559 (-)
G109953 NA non-coding upstream 204780 5396130 ~ 5396354 (-)
G109956 NA non-coding upstream 205947 5397297 ~ 5397517 (-)
G109724 LOC107084717,LOC106511825 other downstream 1095277 4094757 ~ 4095504 (-)
G109600 NA other downstream 2060802 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 3226620 1741120 ~ 1964161 (-)
G109287 NA other downstream 4308029 882459 ~ 882752 (-)
G109275 NA other downstream 4557884 632465 ~ 632897 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 40861 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 591317 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 625690 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 711227 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 837858 6029208 ~ 6034777 (-)

Expression


Co-expression Network