LOC122360242 (elovl4a,LOC107726252,LOC107689158,LOC107689169,LOC107713923,LOC107688984,LOC107559048)


Basic Information

Item Value
gene id LOC122360242
gene name elovl4a,LOC107726252,LOC107689158,LOC107689169,LOC107713923,LOC107688984,LOC107559048
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5575640 ~ 5581732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU162539
TACGCATTggcatttactttattatttttttttttatatatacagcaaTGTATATCTGTCATTCGAAAAGAAAGAAACGAGCCGATGATCGATGATCGTTTTCAAAAGCACAATGTACAAAATCGCACAGAATatacaacattataaaaaattcaAGACAAAACACGTGATGTATTTCAGTGACCGCTCCAAacgagaaagaaaaataaaataaaatgacgcGGAgcttaagacttttttttatttatgcacgATACGGTACAGTAGCTACAAACACACTTCCCAATCCTGTTCGGATGCAGTGATTTCCCGATGGAAAGCTAAAAGCCGCTGCATCCGTCCCGGCCGATCTCGGCTACTGAATTGGTCTGATAATGGACGCAGATATTTGATCCGTTTCCAAGCCGGGCCGCAGAAGCACCGAACTGATATTTATCTTCCCCGTCATTCATATCGGAGGTTTGATCGAAAACTATATAACTGTATATCGCCGGTCACCCCTAATTCTCAGAGAAGCTGAAGCTGCACAGGACCCACGGAAACACATCCTGACGTGAAACGTGAACAGACACGAATATGCTTTACAAACAACGGATATACAGTGAGGTCCAAAAGTCCGTAAGACCAAGACGAAGCGTTTCAGCTATTTCTATCGGACTAATCGTGCGACTCTTTGTACAGATGGCCGGGTTTTCTCCTTCCTGGAGGGTTTTGGAGCTCGGATCATGCTGgagacacttttccactcgttTTGTCATGCTGATAACAGAATCAGTGAAGGATTCTCGCGAGTCGACTTTTGGATCGCACCATAGGAAATGTTATCGTGACTTCTTTCTCATGATCATCGTACACTGACTGGCGTTAGGATAGCGATGCAAAAAAGGCAGACGCATACAATAACGTGCCAAACTTAAAGGggcagttcaccaaaaatgaacagctgacggcagccattgacttccgtGGTATTTCTTCCATCAGCGGCTGCCGTCAGCTGACTTTCTTCATAACGTCTTCTTCTTTTGTTCAAGGAACCCGTACAGGTTCGGAAACAACTCGAGGCcgagtaaatgattttttgggtgaactgtctctttaagggGGACGGTAAGGAAGGGTATCGTTCAGTCTCTTTACATCTAGgctcatttttctctctctctctctgcagtcgTACTGTTTGCCGGACGCCCGTCAGACGCTTCAGTCGCGCTTGGCTCGgcccttcctcttcctcctgccGCTCTCGGCCGCCGCCGGCTTCTCGTCCGTCTTGCCGGCGTTCCCGTTGCTGGAGGCCAGGGCTCCGTTGGAGGCTCCGTTGTGAAGGGCTTTGCCGGGTTTGGTCGCGGTCTCTCGTCGGGGCTGGCGGCGGTACGTCTGGTAATAGAAATTCCCAAAGAGGATGATGAAGGTGAGGGCGTATCCGATCAGACACCAGTGCATCCACTTGGGGAAGGGACAGTCGGAgtagagcgacagagccgtgtgACCGATGGTGACGTGAAACTGGACCTGCGGGAGAAATGCAACATGCGATGCAACCGGAGAGCGGCGCACTCACCCTCACTTCATTGGGATCGTCCGAGTAGTCCACGGGCTGGCAGATGTAGCTGTAGTTGGCCGCTCGCGCCGCGAGGAAGAGCTGAAACACAACAAATgCCGTCCGGGATGTGAACCGTTTGTTCCTTCAACAGATTTGGAGATACGTAGCTCTCtgtggtgaatgggtgccgtcagaaggagtccaagcagctgataaaaacatcacgataaCACACACCACTTCACATCCGGAGAAGACCAAAGCTTTatgttcactgaggGACTGGAGGGCTGTGGGTTATTGTGAGGTTTTTATCaggctctcgttctgacggcacccattcgcatcCATTGCCGAGACACATTTCTACGAATACATCTTGGAAGGATTGATCTTCATCTGGGGTGAACTGATCCTTTAAACGAAACTAAAGATGTAACTTTTCAAAAGAATGAGCAAGAAACCGAAACTAAGAATGTGcactgcaataaaaaatacGTTTTCGATCTGTTTTGGCTGGTctgatttcattcatttctcaAATCTGACTGCGTTTCCGTCCAAATAATGTTGAATCATAAATACCCAGAGTGGCAATTTACAGCTAAATATAGCAGCAGCGGGACATTTATAGCACATTTAACGGAAATATAGTCAGATATAAGAAGTAAAAACTTACAGGCTGCACTCAAAAAATGGTAAGATCTTACTTAACTGgttctgttaatattatttcatattgttGGATATCAATTCGTGCATACCACCAATGGCATCTCCTATGGGTTAAATGCTGCTGGCGTTTTCCGAGGAGCTGGTGGTTTTTGGGCGAGCTCACCTCTTTAAATATGAAGAAGTTAAGGATGACCATGCTGAAGTTGTAGACGATGAGGGTCTTCCTGAGCTGGAAGGGCTCTCGGCCCTGCATGTACTTGGGCCCCAGCCAGAGGAACAGCAGATAGGAGGAGCTGATGGCCAGCGTGGGGAGAGGAGAGTCCATCAGCGGCCATTTCTCCACACGcttgtctacacacacacacacacacatcagaccCAACACAACACGCTTTCATCTGACACATTACCTGCTTCCTGGCAAAACATTTCCataattgtttttcataaacCAACATAACTCTTGCCgaatttgtcatatttttgtcattttgtcatctgttaatgtttctttaagaCCTAACCGGCTGTGTTAGGTCTTAAAGAAGGGCGTTATAATACCGCGTGTCCGTGCTTATCTGCTCGAGAAGATGCAAAAGTGAATAACCCCCGATCTCACGAAGGCCGTTTCATCTATCTAAAAACGTCTTTGTTGAAAACTGTGAATCCAGACAATATTTTTCTGGTTATCATCCTTAGCGTGATCCTGCCTCAAGACTCGCCTTTCAGAAGCAGTAGAATAACTGTATTTGGTGgcttagtattagtattagtattagtattagtattagtttGACCTTCTTCCAAACAGTGCATTTAGTTTCTGAAGAACGTCTTTGTTGTCACCTTTGCTGTGTTCTTGAATGGAAACGGTAGCCAGATATCGGTCACGCTTTATTTGATCTAACtaaataaactcctaattacTGTAATAGTAGGTATTCGTTGGGTTTAGGTAGTATTACGAGATCTAAATGAGAccctaaaacacattttgaaggTTGCAAATCAGTGAAAGCGAATCAGTGGCACTCATTATGCCTATATTGTTATTTGTCTCTGAGCCATTTTGTTCTAAAGTCCTTTATAGGTGCTGATCAATTCAATGTTCGGCCCCTACTCAGGGCTCACAAAAGAAGCCGGACGGTTTGCTCTCAAAGTGAAACGCGTGGACGTTTCCGTCATCTGAATAACCTTCCCCCGAAGGGTTTGCGGATGCTGCGAAGGCTCACGGATGCCATCAAAGATACCACGAAGCTTCAAGTCGAATCGAAAACGGCCAGCGTCGCCTAGTTTCGAACCTAGTTTCCGTTTGAGAACCTGAACACCAAATCTAACAACACGCCGGAGCTGGAGACTCTTCTGCTTTATTGAATCGCTGATATCGGGTCACGGGGGTCGAGAGCGGGTACCTGCGATGGTCAGGCTCCATCTGTAGAACTCGACCGTGTCGTTGATTATGTGCTTTACGAAATCCATCGCCGAGACTCAAATCCTAGTTA
>TU162540
TACGCATTggcatttactttattatttttttttttatatatacagcaaTGTATATCTGTCATTCGAAAAGAAAGAAACGAGCCGATGATCGATGATCGTTTTCAAAAGCACAATGTACAAAATCGCACAGAATatacaacattataaaaaattcaAGACAAAACACGTGATGTATTTCAGTGACCGCTCCAAacgagaaagaaaaataaaataaaatgacgcGGAgcttaagacttttttttatttatgcacgATACGGTACAGTAGCTACAAACACACTTCCCAATCCTGTTCGGATGCAGTGATTTCCCGATGGAAAGCTAAAAGCCGCTGCATCCGTCCCGGCCGATCTCGGCTACTGAATTGGTCTGATAATGGACGCAGATATTTGATCCGTTTCCAAGCCGGGCCGCAGAAGCACCGAACTGATATTTATCTTCCCCGTCATTCATATCGGAGGTTTGATCGAAAACTATATAACTGTATATCGCCGGTCACCCCTAATTCTCAGAGAAGCTGAAGCTGCACAGGACCCACGGAAACACATCCTGACGTGAAACGTGAACAGACACGAATATGCTTTACAAACAACGGATATACAGTGAGGTCCAAAAGTCCGTAAGACCAAGACGAAGCGTTTCAGCTATTTCTATCGGACTAATCGTGCGACTCTTTGTACAGATGGCCGGGTTTTCTCCTTCCTGGAGGGTTTTGGAGCTCGGATCATGCTGgagacacttttccactcgttTTGTCATGCTGATAACAGAATCAGTGAAGGATTCTCGCGAGTCGACTTTTGGATCGCACCATAGGAAATGTTATCGTGACTTCTTTCTCATGATCATCGTACACTGACTGGCGTTAGGATAGCGATGCAAAAAAGGCAGACGCATACAATAACGTGCCAAACTTAAAGGggcagttcaccaaaaatgaacagctgacggcagccattgacttccgtGGTATTTCTTCCATCAGCGGCTGCCGTCAGCTGACTTTCTTCATAACGTCTTCTTCTTTTGTTCAAGGAACCCGTACAGGTTCGGAAACAACTCGAGGCcgagtaaatgattttttgggtgaactgtctctttaagggGGACGGTAAGGAAGGGTATCGTTCAGTCTCTTTACATCTAGgctcatttttctctctctctctctgcagtcgTACTGTTTGCCGGACGCCCGTCAGACGCTTCAGTCGCGCTTGGCTCGgcccttcctcttcctcctgccGCTCTCGGCCGCCGCCGGCTTCTCGTCCGTCTTGCCGGCGTTCCCGTTGCTGGAGGCCAGGGCTCCGTTGGAGGCTCCGTTGTGAAGGGCTTTGCCGGGTTTGGTCGCGGTCTCTCGTCGGGGCTGGCGGCGGTACGTCTGGTAATAGAAATTCCCAAAGAGGATGATGAAGGTGAGGGCGTATCCGATCAGACACCAGTGCATCCACTTGGGGAAGGGACAGTCGGAgtagagcgacagagccgtgtgACCGATGGTGACGTGAAACTGGACCTGCGGGAGAAATGCAACATGCGATGATATCTCTGTATTTTTGGGCCGAATGCGGCCAGCCCGTAATACAGGTACATCAGGACGTGGATGGCTGCGTTCATGTGAGCCCCGAAGAACGCtgtgagaagagaagagagagaaacacacacacattgagcCCTTCAGCACAGCATGTGATGGTTGCACGTACGCCGCTGATGCATCTGATGCTTACACTGTCCCCCGGCGACCCACTTGATGCCGATCCACCACAGAGTGAACATGGTGCAGTGGTGATAGACGTGCAGGAAGCTGATTTGGTTGAACTTCTTGCGTAAGATGAAGAACACGGTGTCGAGGTACTCCACTCCTTTAGAAACAAAGTACCACCACAGAGCCGCTGCCACCTGCCATTACGAGACGGGAAGAGTGCGTTAGTGTGGCGTAATATCGTTTAAACACTATGTTTCGTTTACTgttaatgaaaagaaatgatCAAATTTGACTCTTTAGAGCATTCCAATAATTGAAAGCAAAGAAAT
>TU162541
TACGCATTggcatttactttattatttttttttttatatatacagcaaTGTATATCTGTCATTCGAAAAGAAAGAAACGAGCCGATGATCGATGATCGTTTTCAAAAGCACAATGTACAAAATCGCACAGAATatacaacattataaaaaattcaAGACAAAACACGTGATGTATTTCAGTGACCGCTCCAAacgagaaagaaaaataaaataaaatgacgcGGAgcttaagacttttttttatttatgcacgATACGGTACAGTAGCTACAAACACACTTCCCAATCCTGTTCGGATGCAGTGATTTCCCGATGGAAAGCTAAAAGCCGCTGCATCCGTCCCGGCCGATCTCGGCTACTGAATTGGTCTGATAATGGACGCAGATATTTGATCCGTTTCCAAGCCGGGCCGCAGAAGCACCGAACTGATATTTATCTTCCCCGTCATTCATATCGGAGGTTTGATCGAAAACTATATAACTGTATATCGCCGGTCACCCCTAATTCTCAGAGAAGCTGAAGCTGCACAGGACCCACGGAAACACATCCTGACGTGAAACGTGAACAGACACGAATATGCTTTACAAACAACGGATATACAGTGAGGTCCAAAAGTCCGTAAGACCAAGACGAAGCGTTTCAGCTATTTCTATCGGACTAATCGTGCGACTCTTTGTACAGATGGCCGGGTTTTCTCCTTCCTGGAGGGTTTTGGAGCTCGGATCATGCTGgagacacttttccactcgttTTGTCATGCTGATAACAGAATCAGTGAAGGATTCTCGCGAGTCGACTTTTGGATCGCACCATAGGAAATGTTATCGTGACTTCTTTCTCATGATCATCGTACACTGACTGGCGTTAGGATAGCGATGCAAAAAAGGCAGACGCATACAATAACGTGCCAAACTTAAAGGggcagttcaccaaaaatgaacagctgacggcagccattgacttccgtGGTATTTCTTCCATCAGCGGCTGCCGTCAGCTGACTTTCTTCATAACGTCTTCTTCTTTTGTTCAAGGAACCCGTACAGGTTCGGAAACAACTCGAGGCcgagtaaatgattttttgggtgaactgtctctttaagggGGACGGTAAGGAAGGGTATCGTTCAGTCTCTTTACATCTAGgctcatttttctctctctctctctgcagtcgTACTGTTTGCCGGACGCCCGTCAGACGCTTCAGTCGCGCTTGGCTCGgcccttcctcttcctcctgccGCTCTCGGCCGCCGCCGGCTTCTCGTCCGTCTTGCCGGCGTTCCCGTTGCTGGAGGCCAGGGCTCCGTTGGAGGCTCCGTTGTGAAGGGCTTTGCCGGGTTTGGTCGCGGTCTCTCGTCGGGGCTGGCGGCGGTACGTCTGGTAATAGAAATTCCCAAAGAGGATGATGAAGGTGAGGGCGTATCCGATCAGACACCAGTGCATCCACTTGGGGAAGGGACAGTCGGAgtagagcgacagagccgtgtgACCGATGGTGACGTGAAACTGGACCTGCGGGAGAAATGCAACATGCGATGCCCGTAATACAGGTACATCAGGACGTGGATGGCTGCGTTCATGTGAGCCCCGAAGAACGCtgtgagaagagaagagagagaaacacacacacattgagcCCTTCAGCACAGCATGTGATGGTTGCACGTACGCCGCTGATGCATCTGATGCTTACACTGTCCCCCGGCGACCCACTTGATGCCGATCCACCACAGAGTGAACATGGTGCAGTGGTGATAGACGTGCAGGAAGCTGATTTGGTTGAACTTCTTGCGTAAGATGAAGAACACGGTGTCGAGGTACTCCACTCCTTTAGAAACAAAGTACCACCACAGAGCCGCTGCCACCTGCCATTACGAGACGGGAAGAGTGCGTTAGTGTGGCGTAATATCGTTTAAACACTATGTTTCGTTTACTgttaatgaaaagaaatgatCAAATTTGACTCTTTAGAGCATTCCAATAATTGAAAGCAAAGAAAT
>XR_006252793.1
ATCATTTTCATCAATTCTATGGGGAGTGACATTTGCTTTCCGTCAggttttaaactgaaaaacgtCATTTTCAATTAGAACGATATAAAAACGCACGGcccctttaaataaatgactcaCTCACTTGCCCTTTTTCAGTGCATATGGCCAAAGATTCAGCTGTTTTCGATCACACAATTATGACTTAATATCAGAATTTAAGCACCGGCTCCCTCTTTCGGAGGACTTCAAAGAAATGTGGTATCAAGCCGGAGACATTATTAGGCTAAAACCGCTTCACTTTCAGATTACCATTCTGCCTCCTGATTCACCTCAAACCCGGGTCAGTGGCGCTCGGGCCGGCTGTAACGGATCCccgagtgtCAACCGGAGAGCGGCGCACTCACCCTCACTTCATTGGGATCGTCCGAGTAGTCCACGGGCTGGCAGATGTAGCTGTAGTTGGCCGCTCGCGCCGCGAGGAAGAGCTGAAACACAACAAATgCCGTCCGGGATGTGAACCGTTTGTTCCTTCAACAGATTTGGAGATACGTAGCTCTCtgtggtgaatgggtgccgtcagaaggagtccaagcagctgataaaaacatcacgataaCACACACCACTTCACATCCGGAGAAGACCAAAGCTTTatgttcactgaggGACTGGAGGGCTGTGGGTTATTGTGAGGTTTTTATCaggctctcgttctgacggcacccattcgcatcCATTGCCGAGACACATTTCTACGAATACATCTTGGAAGGATTGATCTTCATCTGGGGTGAACTGATCCTTTAAACGAAACTAAAGATGTAACTTTTCAAAAGAATGAGCAAGAAACCGAAACTAAGAATGTGcactgcaataaaaaatacGTTTTCGATCTGTTTTGGCTGGTctgatttcattcatttctcaAATCTGACTGCGTTTCCGTCCAAATAATGTTGAATCATAAATACCCAGAGTGGCAATTTACAGCTAAATATAGCAGCAGCGGGACATTTATAGCACATTTAACGGAAATATAGTCAGATATAAGAAGTAAAAACTTACAGGCTGCACTCAAAAAATGGTAAGATCTTACTTAACTGgttctgttaatattatttcatattgttGGATATCAATTCGTGCATACCACCAATGGCATCTCCTATGGGTTAAATGCTGCTGGCGTTTTCCGAGGAGCTGGTGGTTTTTGGG

Function

symbol description
elovl4a Predicted to enable fatty acid elongase activity. Acts upstream of or within very long-chain fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including liver; nervous system; neural rod; pleuroperitoneal region; and trigeminal placode. Human ortholog(s) of this gene implicated in corneal dystrophy and spinocerebellar ataxia type 34. Orthologous to human ELOVL4 (ELOVL fatty acid elongase 4).

NR:

description
PREDICTED: elongation of very long chain fatty acids protein 4-like

GO:

id name namespace
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162539 True 3726 lncRNA 0.46 4 5575640 5581732
TU162540 False 2039 lncRNA 0.48 2 5578919 5581732
TU162541 False 2006 lncRNA 0.48 2 5578919 5581732
XR_006252793.1 False 1197 lncRNA 0.44 4 5576988 5578651

Neighbor

gene id symbol gene type direction distance location
dctn3 dctn3,LOC107713912,LOC107559051,LOC107689179,LOC107726235,LOC107689028,LOC107569444 coding downstream 1840 5571501 ~ 5573800 (-)
ttk ttk,LOC107713924,LOC107726228 coding downstream 4858 5560481 ~ 5570782 (-)
bckdhb bckdhb,LOC107688983,LOC107689156,LOC107559046,LOC107569448 coding downstream 15744 5508617 ~ 5559896 (-)
tpbgb LOC107688980,LOC107725281,LOC107713928,LOC107713927,LOC107689178,LOC107559023 coding downstream 155000 5418473 ~ 5420640 (-)
rpa2 rpa2,LOC107713930 coding downstream 195678 5367332 ~ 5379962 (-)
mrpl51 mrpl51,LOC107726236,LOC107713917,LOC107559052 coding upstream 239259 5820991 ~ 5822850 (-)
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding upstream 252425 5834157 ~ 5850214 (-)
cers2b cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627 coding upstream 271744 5853476 ~ 5873058 (-)
celf3b LOC107559029,LOC107713913,LOC107689166 coding upstream 295316 5877048 ~ 5900217 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding upstream 667187 6248919 ~ 6261997 (-)
G109944 NA non-coding downstream 138573 5435832 ~ 5437067 (-)
G109956 NA non-coding downstream 178123 5397297 ~ 5397517 (-)
G109953 NA non-coding downstream 179286 5396130 ~ 5396354 (-)
G109942 cyp4t8,LOC107559042,LOC107703932 non-coding downstream 228081 5346405 ~ 5347559 (-)
G109914 NA non-coding downstream 254344 5247238 ~ 5321296 (-)
G110090 NA non-coding upstream 193115 5774847 ~ 5777041 (-)
G110093 NA non-coding upstream 197022 5778754 ~ 5808349 (-)
G110100 LOC107713901,LOC107689161,LOC107559047,LOC107689017 non-coding upstream 228239 5809971 ~ 5813684 (-)
G110102 NA non-coding upstream 233828 5815560 ~ 5816873 (-)
G110106 NA non-coding upstream 270700 5852432 ~ 5852762 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other downstream 330082 5232211 ~ 5245558 (-)
G109724 LOC107084717,LOC106511825 other downstream 1480136 4094757 ~ 4095504 (-)
G109600 NA other downstream 2445661 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 3611479 1741120 ~ 1964161 (-)
G109287 NA other downstream 4692888 882459 ~ 882752 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 200935 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 235308 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 320845 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 447476 6029208 ~ 6034777 (-)
G110215 NA other upstream 514943 6096675 ~ 6099927 (-)

Expression


Co-expression Network