si:dkey-283b15.2 (si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647)


Basic Information

Item Value
gene id si:dkey-283b15.2
gene name si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5782667 ~ 5790534 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU162682
GAAAACCTGTCACCCTGGCATCCCATCAAACCTGGAGGAGTCTTCATACTGGGACAGGAGCAGGACACACTGGGCGGCCGCTTCGATGCGACGCAGGCGTTCGTTGGTGAAGTCTCAGACGTTCAGATGTGGTCTCACGTTCTCACGCCGCATGACATCTACAGCCTGGCGTCGTGCGGGGGTCACATGACCGGCGACATCATCGCCTGGGCGGAGTCAGTGGTGGAGCTGCACGGCGGGGTCACCAAATACCCCTTCGACCCCTGCCATTAAAGTGCTCTGACGACTCGTAATCCGGTTTCGATGCGAAATTCGTTCATAATCACTTCAAATATATTGCC
>XM_043260423.1
TAATTTCAACTTCAATAATGACACAAGAATTAACAGCCATCAcaacaaatttgaataaatttgaTAAACAGCATCACAAACACTTGCTACTTTTTCAGATAACTAAACAGAAGTAcagatttcacattttaatcagttttttatACGCTGTTGTTTGGCTCAGACTTGggttatacattatattaattgtctgttataatactttttatacacGAGTTTCTCTGCGTTATTTTCTTCAGTTTGAATCCTACTTCTTAATTTCTACATTCTGCATCCTCTTTTCCACTGATGCGGTACAGTCGTACCGAACGCTCCCTCTCTCCTTTACGTTGTGGACAGCGTGTGCGTCCAGCTGTCTTTCTGCCAGCCATCAGTCCGAGCACTTAATTAATCCAATTAATGGGTAAAGTTCAGCAGGTAGAGTAGATACataacactctctctctctttctcaaacACACGCTAATCCTCCGCAGACCGTTGATGACGACTCTTTTCTTGATTTATCCTCATTAGGACAGACTCTGACGTACACACTTCCACTTGCCCGGCGTAAATGCCTGTCCTGTATTAATTTAGTAGCTTCGTGGAACTGATTATCCTGAACTCTTAAATGGAGCGTCCTTCTCGAAGACTCCTTTGAAGGCGTTCTTGGTGTTAAATTACAGATTAGTCCAATAGTTTCTGAGGTTTTTTAAAGTATCAGTAGATGCTTTTTAGAAGAACTAGAAAGTGTTAAAGCAAACTGAAgatcatataaatatgtaccTACTTAAAATAGGAATTCAatagaaatgacatttaagCAAATTTGTGTTTATGATAGGTCATAGTTTAACGTAAAAGATGTCTTTTGGGAATGTATCATGACAAGGGTTTTCTTGAACTCTTTCTCCAGGTTTCAGTCGGGCGGGATCATCAGACGgattacatgtaaatacacatgCTCTCTGAACGGCTGGTGACCTTGGAGAGGAGGAGGCTGAGAAACACACAGTGAGCAGCAAGAGACAGGATTTAGACCGAAGAAGGTCTGCGCTCCTTCTCTTGAAGGTACGGATCTAGGAGCTTTAAACATCAAATAGCCGACTATTTGATCAGTTCGGCTGCATTAATCGCACAGAAATGCATCCGGCCAGCTCAAGAAAGAGCGAGGGGcttttctccttcttcttctgtgCCATCTGTCTTGCCGTGAGCGCTGGGACAGGAATGCCGGGTTCAGACTACAACCCTCATCCCCGCTTCATCTGCACCCCGATCCCGGCCGATGCCGATCCCGGGTGTTTTCCGTCAGCGGGCGGCCCCGGGGGCCCCGGGGGCCCGGGACACCACGGCGGGAACAGCAACGGCTGGTGGGGGATGTCCGAGGAGGCCAAAGCCACGATCCTGCACCTGCGGGAGAGTCTGGTGCAGCAGAAGGAAACCATCCTGGACCAGAGGGAGACCATCCGGGATCTGACGGCCAAACTGAACCTGTGCGAGGGTCTGAGCCGCACGCCTGCGCAGCTGGCCCATCACGCCCATCACGCCTACCCCACAGCACCCCACGCCGGGCCCCTCGGGCTGGAGCTGGGTCACTACGGCGACGTGGTCGGAGGGCATCACGCCGGGAAAGGTGCTCTGAGTGAGAAGCACGTGACGGAGGAGGTTCCTTCGCCCTCGTCCACGCCGGAGCAGATGAGCAAGATGCTGCAGAGTCTGAAGCAGCGGCTCGACAACCTGCAGACGAGAAACACCTCCAGCAGCTACTCCAGCTCACTGAAGGACCTCCTGCAGAGGAAGATCGGCGCTCTGGAGCAACAGATGCAGCACCATCACTCCACTCACAGCGACCACGAGGAGGATGAGGTCGGTCACCACGGCGACGATCACCATGACGACAGAGACCACGACGACAGCCACAGCGACCACGCCGATCCTCACGACGAGAGCCACCACGCTGATCACCATGATGACGATCACCACGGCGACGATCACCACGATGACGATGATGATCACCATGGCGACGAACACCACGATGGCAATCACCATGGCGACGATCGCTACGATGGCGATCGCTACGATGGCGATCACCATGGCGACGATCGCCACGATGACAGCCACCATGATGACAACAGCCACGACAACGGTCACCATGACAACGAGGCTTCGGAGCACGGCTCCGCGAGGTTGTCGTATAACCTGCAGGGTCACAGAGAAGCACAGGGTGCTGGAGCACACAGTAAACTGGACGCGGTGCTCAGTCAGCTTCAGCACAGGCTCACCGACACGGGTTCTAGAAAGAAGAGCAAAGAGGCTTTCCAGATCGGCTTCCCCATGAGAACTAACTACATGTACGGGCGAGTGAAGCGCACGCTGCTGCACGAGATCTTCTCCTTCACACTGTGTCTGTGGATGAAGGCTGGCATCGCCCCGGGGCTCGGGACACCCTTCTCGTACTCCGTGCCTGGACAGGCCAACGAGCTGGTGCTCATCGAGTGGGGAAACAACCCCATGGAGCTGCTGGTGGATGACAGAgCCGTCACTCTTCCGCTCTCAGTGAGTGATGGTAAATGGCACCATGTGTGTGTGACGTGGTCGACGCGGGACGGTCTGTGGGAGGCCTATCAGGACGGAGTGAAGAGAGGATCGGGAGAAAACCTGTCACCCTGGCATCCCATCAAACCTGGAGGAGTCTTCATACTGGGACAGGAGCAGGACACACTGGGCGGCCGCTTCGATGCGACGCAGGCGTTCGTTGGTGAAGTCTCAGACGTTCAGATGTGGTCTCACGTTCTCACGCCGCATGACATCTACAGCCTGGCGTCGTGCGGGGGTCACATGACCGGCGACATCATCGCCTGGGCGGAGTCAGTGGTGGAGCTGCACGGCGGGGTCACCAAATACCCCTTCGACCCCTGCCATTAAAGTGCTCTGACGACTCGTAATCCGGTTTCGATGCGAAATTCGTTCATAATCACTTCAAATATATTGCCTTCCGTTTATACAAGAAACTTGAATGACCCCGTGACCTCCAGGATTTCAGCAGGGACccgttttgtattgttttagtgttttgctCAGAGAATGTTTTCTTACTgaacttttatatttgtattctaTAAATGGCTTTTCGGTGCCATTGAACGTTCGATGCAAGCATATGCCATATTGTCATAACTTGAATAGAAAAGCGTAGATCACGAATAGGACAGAAGTGCTATGAATGtagatgtaaaaaaatagaGAAGAACTCTAGCTGAGCAGTTCAAAGACTGATTTTCTTGTACTGTAAGAAGAATCTGAAGATACAGCGACACCAAAGAGAAGAGTCATGTGTTtgtacattgttttgttttttctataaTTAAAGTGTAATTGAAATCGGTATTTCCTAGGTTTGACTGTACTGTCCAGACGTTCAAATATTTAGCCACCTCGAAACAGAGCTAAATAAGCAGCTGTTCTGAGATGCTTTACAGATTGTTGTGATTCGATTTAGGTTTAATGTGCTGTTAATTTACttaaaagatcattttacaCTAACGTTTGCGTATCTGTATGTATGTTTTGATTAacctgttttcatttgtttacagttttgaaaGCAGAAATGCAATAAAGC
>XM_043260424.1
GTCCCTTACAAGCCGTCTGGTGACTGATTTGGACTAACAGTACAGGACAAACCTGCAGGAGTCCACAGATACCCACAGCCTCGACACATCAGCCGCGGCGTCTGCGCTGTTACTGTTTCAGTCGGGCGGGATCATCAGACGgattacatgtaaatacacatgCTCTCTGAACGGCTGGTGACCTTGGAGAGGAGGAGGCTGAGAAACACACAGTGAGCAGCAAGAGACAGGATTTAGACCGAAGAAGGTCTGCGCTCCTTCTCTTGAAGGTACGGATCTAGGAGCTTTAAACATCAAATAGCCGACTATTTGATCAGTTCGGCTGCATTAATCGCACAGAAATGCATCCGGCCAGCTCAAGAAAGAGCGAGGGGcttttctccttcttcttctgtgCCATCTGTCTTGCCGTGAGCGCTGGGACAGGAATGCCGGGTTCAGACTACAACCCTCATCCCCGCTTCATCTGCACCCCGATCCCGGCCGATGCCGATCCCGGGTGTTTTCCGTCAGCGGGCGGCCCCGGGGGCCCCGGGGGCCCGGGACACCACGGCGGGAACAGCAACGGCTGGTGGGGGATGTCCGAGGAGGCCAAAGCCACGATCCTGCACCTGCGGGAGAGTCTGGTGCAGCAGAAGGAAACCATCCTGGACCAGAGGGAGACCATCCGGGATCTGACGGCCAAACTGAACCTGTGCGAGGGTCTGAGCCGCACGCCTGCGCAGCTGGCCCATCACGCCCATCACGCCTACCCCACAGCACCCCACGCCGGGCCCCTCGGGCTGGAGCTGGGTCACTACGGCGACGTGGTCGGAGGGCATCACGCCGGGAAAGGTGCTCTGAGTGAGAAGCACGTGACGGAGGAGGTTCCTTCGCCCTCGTCCACGCCGGAGCAGATGAGCAAGATGCTGCAGAGTCTGAAGCAGCGGCTCGACAACCTGCAGACGAGAAACACCTCCAGCAGCTACTCCAGCTCACTGAAGGACCTCCTGCAGAGGAAGATCGGCGCTCTGGAGCAACAGATGCAGCACCATCACTCCACTCACAGCGACCACGAGGAGGATGAGGTCGGTCACCACGGCGACGATCACCATGACGACAGAGACCACGACGACAGCCACAGCGACCACGCCGATCCTCACGACGAGAGCCACCACGCTGATCACCATGATGACGATCACCACGGCGACGATCACCACGATGACGATGATGATCACCATGGCGACGAACACCACGATGGCAATCACCATGGCGACGATCGCTACGATGGCGATCGCTACGATGGCGATCACCATGGCGACGATCGCCACGATGACAGCCACCATGATGACAACAGCCACGACAACGGTCACCATGACAACGAGGCTTCGGAGCACGGCTCCGCGAGGTTGTCGTATAACCTGCAGGGTCACAGAGAAGCACAGGGTGCTGGAGCACACAGTAAACTGGACGCGGTGCTCAGTCAGCTTCAGCACAGGCTCACCGACACGGGTTCTAGAAAGAAGAGCAAAGAGGCTTTCCAGATCGGCTTCCCCATGAGAACTAACTACATGTACGGGCGAGTGAAGCGCACGCTGCTGCACGAGATCTTCTCCTTCACACTGTGTCTGTGGATGAAGGCTGGCATCGCCCCGGGGCTCGGGACACCCTTCTCGTACTCCGTGCCTGGACAGGCCAACGAGCTGGTGCTCATCGAGTGGGGAAACAACCCCATGGAGCTGCTGGTGGATGACAGAgCCGTCACTCTTCCGCTCTCAGTGAGTGATGGTAAATGGCACCATGTGTGTGTGACGTGGTCGACGCGGGACGGTCTGTGGGAGGCCTATCAGGACGGAGTGAAGAGAGGATCGGGAGAAAACCTGTCACCCTGGCATCCCATCAAACCTGGAGGAGTCTTCATACTGGGACAGGAGCAGGACACACTGGGCGGCCGCTTCGATGCGACGCAGGCGTTCGTTGGTGAAGTCTCAGACGTTCAGATGTGGTCTCACGTTCTCACGCCGCATGACATCTACAGCCTGGCGTCGTGCGGGGGTCACATGACCGGCGACATCATCGCCTGGGCGGAGTCAGTGGTGGAGCTGCACGGCGGGGTCACCAAATACCCCTTCGACCCCTGCCATTAAAGTGCTCTGACGACTCGTAATCCGGTTTCGATGCGAAATTCGTTCATAATCACTTCAAATATATTGCCTTCCGTTTATACAAGAAACTTGAATGACCCCGTGACCTCCAGGATTTCAGCAGGGACccgttttgtattgttttagtgttttgctCAGAGAATGTTTTCTTACTgaacttttatatttgtattctaTAAATGGCTTTTCGGTGCCATTGAACGTTCGATGCAAGCATATGCCATATTGTCATAACTTGAATAGAAAAGCGTAGATCACGAATAGGACAGAAGTGCTATGAATGtagatgtaaaaaaatagaGAAGAACTCTAGCTGAGCAGTTCAAAGACTGATTTTCTTGTACTGTAAGAAGAATCTGAAGATACAGCGACACCAAAGAGAAGAGTCATGTGTTtgtacattgttttgttttttctataaTTAAAGTGTAATTGAAATCGGTATTTCCTAGGTTTGACTGTACTGTCCAGACGTTCAAATATTTAGCCACCTCGAAACAGAGCTAAATAAGCAGCTGTTCTGAGATGCTTTACAGATTGTTGTGATTCGATTTAGGTTTAATGTGCTGTTAATTTACttaaaagatcattttacaCTAACGTTTGCGTATCTGTATGTATGTTTTGATTAacctgttttcatttgtttacagttttgaaaGCAGAAATGCAATAAAGC

Function

symbol description
si:dkey-14o18.2 Predicted to enable metal ion binding activity. Predicted to be located in extracellular region.

NR:

description
PREDICTED: neuronal pentraxin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162682 False 341 lncRNA 0.56 2 5783296 5784229
XM_043260423.1 True 3607 mRNA 0.49 5 5782667 5789002
XM_043260424.1 False 2823 mRNA 0.53 6 5782667 5790534

Neighbor

gene id symbol gene type direction distance location
dctn3 dctn3,LOC107713912,LOC107559051,LOC107689179,LOC107726235,LOC107689028,LOC107569444 coding downstream 208867 5571501 ~ 5573800 (-)
ttk ttk,LOC107713924,LOC107726228 coding downstream 211885 5560481 ~ 5570782 (-)
bckdhb bckdhb,LOC107688983,LOC107689156,LOC107559046,LOC107569448 coding downstream 222771 5508617 ~ 5559896 (-)
tpbgb LOC107688980,LOC107725281,LOC107713928,LOC107713927,LOC107689178,LOC107559023 coding downstream 362027 5418473 ~ 5420640 (-)
rpa2 rpa2,LOC107713930 coding downstream 402705 5367332 ~ 5379962 (-)
mrpl51 mrpl51,LOC107726236,LOC107713917,LOC107559052 coding upstream 30457 5820991 ~ 5822850 (-)
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding upstream 43623 5834157 ~ 5850214 (-)
cers2b cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627 coding upstream 62942 5853476 ~ 5873058 (-)
celf3b LOC107559029,LOC107713913,LOC107689166 coding upstream 86514 5877048 ~ 5900217 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding upstream 458385 6248919 ~ 6261997 (-)
G110090 NA non-coding downstream 5626 5774847 ~ 5777041 (-)
LOC122360242 elovl4a,LOC107726252,LOC107689158,LOC107689169,LOC107713923,LOC107688984,LOC107559048 non-coding downstream 200935 5575640 ~ 5581732 (-)
G109944 NA non-coding downstream 345600 5435832 ~ 5437067 (-)
G109956 NA non-coding downstream 385150 5397297 ~ 5397517 (-)
G109953 NA non-coding downstream 386313 5396130 ~ 5396354 (-)
G110100 LOC107713901,LOC107689161,LOC107559047,LOC107689017 non-coding upstream 19437 5809971 ~ 5813684 (-)
G110102 NA non-coding upstream 25026 5815560 ~ 5816873 (-)
G110106 NA non-coding upstream 61898 5852432 ~ 5852762 (-)
G110206 NA non-coding upstream 207087 5997621 ~ 5999361 (-)
G110221 NA non-coding upstream 328251 6118785 ~ 6119767 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other downstream 537109 5232211 ~ 5245558 (-)
G109724 LOC107084717,LOC106511825 other downstream 1687163 4094757 ~ 4095504 (-)
G109600 NA other downstream 2652688 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 3818506 1741120 ~ 1964161 (-)
G109287 NA other downstream 4899915 882459 ~ 882752 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 26506 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 112043 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 238674 6029208 ~ 6034777 (-)
G110215 NA other upstream 306141 6096675 ~ 6099927 (-)
LOC122359836 adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842 other upstream 489175 6279709 ~ 6339496 (-)

Expression


Co-expression Network