LOC122359836 (adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842)


Basic Information

Item Value
gene id LOC122359836
gene name adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6279709 ~ 6339496 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU162877
ctttttaatgtatttttcctgtatatattataatgtgaTTGATACAATCtctcatttgatttgatttgattttattatttatataaattgtcaTTGGTGTTAAACTGAGGGGAAGGCCGTTACagtcaatacaaatatttaatgagatattataaaatattatgtaatattcaagataaatattcttttaaacaagcaagtttttcattaacaaaacataaaagataatagcttttttttctgcatttactTAGTGCCCTTAAC
>XM_043260027.1
CGCTGCTCCAGACGCGCTGAGCGGACACTCTGAGAACATCTGCACGAGTCATGGCACAGCTATCCTCCAGCACACCGCGTTAAAGCGCCGAGAGGAGCTCTCCAGAAGCGCGCGAGCGGGATGCGGGGCGCTGATGCTGCGCGATAGATTTGGAGAGATTCAGTGAGACTCGTCAGGAGAGGCACGGAGGCTGCTCGCGGCAGATTTTGGATAAGAGTCTCTAAGAGACATGGCTTGCCTGCGTTCTGTGCCGGCGAGGAGGAATCATACCGCGTCCATCTGCTCTGTGCTGCTCGTTCTGTTTCTTACACTCGGATGCCAGCAGAGATCTCTCCGCGCATCCGCAACCCTTCAGGCTGGTCCTCAAGTGAAGCGTAAAGCTCTGCTGGAGACTCTGCGGTTACCTCACAACACAGAATATGAAATCGTGGCCCCGTTCGAGGTGGACCATCAAGGGCACTACGTTTCCCATGCCGTAGCCCACCATCACCGAGAGGAAGCGCTCCGGAGGGTCAAGATGGCGGCGCGCGTGCACTTCAGGCTGCGTGGACTAGGACAGGACTTCCTTCTGGACCTGCGGCCGTCACATGACCTGATCGCCCCCAGCTTCACCGTACAGACGCTGGGCAGGAGCGGCACCAAGAGCCTGCTGCCTTTTCCTCAGGACCACCTCTGCTTCTACCACGGCGtgctgaggtcagaggtcaactCATCCGTGGCCCTGTCGACGTGTGCAGGGATGTCAGGTTTGATCAGAACTCAGGATGCAGATTACTTTCTGAAGCCGTTGCATCTACATCAGGCACTTCTGGAGAACTTCTCAGCCTCACCTGACCACCACCCCCACATCCTATACAAGAGGTCCACACCAGCGCAGACCAGCAGAGACAGGAGGTCAATTGAGCCAAAGACGGTCAGCAGAAGAGATTCAGCAGTCCCGTATCTCTGGACGGATGCAAAGGAGAACCAGCATACTCCGCAGAGACAGCACTTCTGTGGAAGACGGAAGAAATATATGCCTAAACCTCCTGAGGATGATATCTATATTTTCCCGGATGAATATAAGTTCATGCCCAGAGAGAAGCGAGCCATTATGTTCAAACCTCAGACACAGAAGAGGCTAAATGTGGAGACCCTGGTGGTGGTCGACCGCAAGATGATGGACAATCGCCATGAGAATATAACCACATATGTGCTTACTGTTCTTAACATGGTCTCAACACTTTTCAAAGATGGCACTATTGGAGGTGATATCAATGTTGTAATTGTTGGACTAATACTGCTGGATGAAGACCAGGATGGACTAGTGATTAACCATCATGCGGATCACACTCTGAACAGTTTCTGCCAGTGGCAGTCAGGGCTGGCTGGAAGAGAAGGTCGCCGCCATGATCATGCCATCCTGCTAACTGGTCTGGATATCTGCTCCTGGAAGAACGAACCATGTGACACCCTGGGCTTTGCTCCAATCAGTGGGATGTGTAGTAAGTACCGCAGCTGTACGATCAATGAGGACACGGGTCTCGGTCTGGCCTTCACCATCGCCCATGAATCTGGCCACAACTTTGGAATGGTCCATGATGGCGAAGGAAACGTATGCAAGAAGTCGGTTGGAAATATCATGTCTCCTACTTTGGCGGGACACAACGGTCTATTCTCCTGGTCATCCTGTAGCCGGCAATATCTGAACCGATTTCTGAATTCTGCTCAGGCCACCTGTCTGTCTGACGAGCCCAGCGCCATCCACGAGTACAAGTACCCTGAGAAACTGCCCGGAGAGCTGTATGACGCCGACACACAGTGCAAGTGGCAGTTCGGAGAGAAAGCTAAACTCTGCACTCTGGACTTCAAGAAGGACATCTGTAAAGCCCTCTGGTGCCGGGTCGGAAGAAAATGTGAGACCAAGTTCATGCCGGCCGCCGAGGGCTCGGCCTGCGGTCCAGAAATGTGGTGTCGTCGGGGTCAGTGTGTGAAGCAGGGGGATGATGGTCCGAAGCCGGTTCACGGTCAGTGGTCATCCTGGTCCGTCTGGTCCGGCTGCTCGAGAAGCTGTGAGAGTGGAGTGACctacagagagagacactgcAGCAGCCCCAGgCCGATGTACGGCGGCAGGTTTTGCGAGGGCTCGTCTCGCTCTTACAAACTGTGCAACACCGCAGACTGTCCTCAAAACGCCGTGGACTTCAGAGCCGCCCAGTGCGCCGAGTTCAACAGCAAACCCTTCCGCGGATGGCACTACAAGTGGAAACCCTACACACGCGTGGATGATCAGGACGTATGCAAGCTTTACTGCTTCGCTGAAGGTTATGACTTCTTCTTCGCCCTCTCCAGTAAAGTCAAGGACGGGACGCTCTGTTCACAGGACAGCTCTGATGTCTGTATTGATGGCATTTGTGagagagTGGGCTGTGACAGGGTGCTGGGATCCAACGCCGTGCCGGATCTGTGTGGCGTCTGCAAGGGAGACAACTCCACCTGCAAGATCTACAGAGGACAATACACCAAACAACATTACCTGAGCCAGTACTACCGTGTGGTGACCATACCTGCTGGAGCACGCAGCATTCGTGTGATGGAGCTCAACTCCTCCAGCTCTTATCTGGCCCTGAGGAATCTGCAGAGGAAGTATTATCTGAATGGACGCTGGACAGTGGACTGGCCCGGACGACACGCCATCGCTGGGGCTGTGTTCAACTACAAGAGACCGTACAATCGTCCCGAAAGCCTCAGCTCCACTGGACCCACCAATGAGACGCTGGTGGTGGAGGTTCTCATGCAGGGCTGGAATCCGGGCATTCAGTGGGAATACACACTGAGCAAAGAGCATACAGAGCGACGCAACCAGCCCAAGCACAGCTACACGTGGGCCATCGTTCGCTCGCAGTGCTCAGCCAGCTGCGCAGGAGGTCAGATGGTCAGTAAATCAGTCTGCTACAAGGATCTGAGGATCCAGGTGAACACGTCTTACTGTAACTCACGATCTCGGCCGTCCACCGGAGCCACGTCCTGCAACACACAGCCCTGTCCCGCAAGCTGGCGTGTGGAGGACTGGGCCGTGTGTAATCGCAGCTGTGGATCCGGAGAGCAGATCAGACAGGTGCGCTGTGTCCAGAAAAGCGGCCTGGATCAGGTGCAGACGGTGAGCGATGACCGGTGCTCACAGCCAGCGCCGGCCCGAACGCAGACCTGTAACACACACAGCTGCCCGCCGGCCTGGAGCGCCGGACCCTGGTCTCAGTGTTCTCGTAAATGTGGGAAGGGAGTGATGAAGAGAGCGgtggtgtgtgtgagcgctGTCTCTGGAGCGCTGCCGGACTCGTCCTGTGCCGCTCTGCCCAAACCCAGCGGCCAGGAGACCTGCGTGGTCAAGCGCTGCCACAAACAGCGCAAGGCCCAGTGGTTCGTCTCAACCTGGCAACCGtGTTCAGCGTCCTGTGGTAAGGGCCTGCAGCTGCGTGTGGTGAAGTGCGCAGAGAAGGACGTCGCAGGTAAATACAGAGAACTGTCAGCCAAAAAGTGCCAGCATGTGCCCAAACCCTTGGAGCTCCAGAGAAGCTGTGTCCTGTCAGACTGTCCCTCTCCTCGCGGCAGACCGGACTGGTACTCTTCCCCGTGGTCTCAGTGTACGGTGTCGTGTGGAGGAGGTGTTCAGATGCGCTCCGTCCAGTGTCTCCTTCACGGCCGGCCCTCCTCCTCCTGTGTCCTGCAGATGAAGCCGCTGATGACCCAGGCCTGTAACACTGCCTTCTGCCCTCAGCCTCAGAAGAAAGATGCGGTCTGTAAGGATCATTTCAGCTGGTGTTATCTGGTGCCGCAGCACGGCGTTTGCAACCACAAGTTCTACGGGAAGCAGTGCTGCAGGTCGTGCTCGCACACGAGCCCCTGAGACCTCCTCGGACTGAACACAAAGACATTGATAAAGACTCCGGGTCCGGAGCGTGACGCGGACCATTCCGCGCGTCGCTTTctacaggaaatgacatcatcgATGAAGCCCTCTGGAGGCGGGGCGTGAGGACTCACAGAGCTTGAAGCGGATCGAATGGGCTCCGCCTCCGGATGTAGGCCAGACCGAATCCATGTGTCCAGAAGCGTGGTTTTTCCACGAACACGCCTCATAATATCACGTGAATCACATAAACGGGCTTAATGCGTCTCATAGCGGAGAATACGGTGTCATGTAGTGGAGCTACAGTCATTTTTGGTGCTATATGTTGATATTAACGGCAGCCgagcagctgttttaaattaacACAACAACGAATCAGCGCTTTTgtatgattaatattaattctcTTATTTATTAACAATGCTGCAGTATACCAGAATGCTTTTCTGCTGTAACATACGGCTTTAATGTTGCTGTTCGGGTATAGTTgcacgatttttttttttttttttgtatgtttaatcGTGCCTCCGCAGTACTGTTACGTGTTTGGGTTTCATTATTTCGGAGGAAAACAGAATGCCAATTAAACTAGCTTAATGAACTGTCACGTTTCACGAAGTCAGCTCTCTTCGCGGGACGTTTTTAGCAGCGGCGCGGCTGCCAAGAGCCGTAAATCTGTCTTTGGTCTGACCGAGAGATGCTGCACATGTGGGTTTTGAACAGAGCTGCGTCTCCCATCATGTACAGAGTTTGTGTGCGTGTCCATGAATGTAATCGCTCGTCCGCAACCAGCGTTATTCTCGAGAGTGGACGCAGGGTTTGTTATCGACGGCGGTTCTTATTAAAGTGACGCGTGTCACGTTGCCATCACACGACAGCGTAGTCTTTCTCTCTTGGCCGTAGATTGCCGGTGATCCAGCTTCGCTGAGTCAGAGCTTTTTCTTGTTCTTCACGCGCTATTGTTTCCAGATGGAGTCAGGCTAGGCCGCTGGAGCGCGTTCAGGAATTAATATGACTTGTGAGCTTTTCACCGGCTTCTAACGTACGGCTCTGTGAAGACTTTAACAGAAAACACATACATCGCTTTACGTTATTAATGTCTCGTGGCATTCGGTGAGACTTAAACCATGTTTCGTTAGAGTCTTTTGAAAGTTTAGATGAATGTGCTGAACGTTACTGAAGCGATTCTGAACGTGGAGCAACTGCTGCCATCGCAAGCAATAAACCAGATGAAAACCATCTAATACTTACGCTGAATGATTACACGACGGCCTTCGTTGGTGCTGTGAGGCCGTGCTGATCAAACCATCAGCTCCAGaggaaaacaaatattcaatCTCACCCTAAAatccgtttttgaatccattcggACGACCTCCGGGTCTGACCGTAGAAggtttagcatagcttagcatagatcattgaatctgattagaccgttaaaacatttccaaaggGTTTCAAACTTTTCATTGCCCGCCTGGCTTAGTGCAGAAAAGTCAGGTTTTCAATAGGAAAACTCTAGAAACTCTGGACATGttagatgcttctggtctaatcagattcagtgatctatgctaagctatgctaaaagtgctatcgccgtacaataaacaaatgattatatataaatcgtTGGCTTGTTGTtctacacacatgcatacagacATAAACCACACAGTCATGAAATGCACTTATTTAGACGCTCCGATAACAACAGAAGACAATACTTTTCTGGTAAGAAGCgtgcaaactcaagcatttCTCTGTCCAGTCCGCTCgatttaaagtgttttaccACAGCTCTCgtctgttttttgtctttttatctaataaatttgtaatatgATCCATAATTGCTACCTGGTAAATTTAATAACAGTATTTCCCTCAACCGCTGCTTTTGTCATTGATTTTGGGGTTGTGCTGATCGTAAAGTGTTCTGGGTGGACCTTTCCAATTTTGGTAATAACCAAACTTCTGTGTAACCcccaaaattgtgtttttttgactCGTGGCATAAACATAGCAccttttagcgagacacgaaatacgtaccaacaagtacatatggCTGCAGTTTCCTGAAGAACGCGGCGTGTTTTAACACTGTCTGCTAGGTTTAGGGTTGATTTGATGTAGGGCATGTTTccaacatgataaaaaaaagtgcatgttttTATGAGAGCAGGTTGTTTTTTGGTTACAGTACTCCTTGAATCTAGACCCTCCtcactttaaatgtattattattatctgttacTATTGCCAAATTTTACgccaaatttctttttttgtcttaatgAAACAGTTTGATGTGTATATAAGATTCTTTCACGATTCTCATAAGCTAACATAGTATGCTTTGGATTAACGTACGTGACCCTCGTCGCCTTTCGTTCTCATTTTGTCTCAGTATTTCTTGTTCTTTTGATGCATGAAgctaaaaaatgttaaataatatgcaCTTGCTCAGAGAAGAGATGAGAAGAGATGAGCTCAGAGAACTGCTGGTCAGATTCAGGACTAGAAGTGAAGAGCTCGTCGTCACAGACTGATGGACGGCTGGTCAGTGTGATCTGTGTTCGGTCCGGTGTGGAGTGGATGTGAACTAAAACAAGAGCTTTCCTTCCAGACAGAGTTGGGGAGGGACTAGTTACAGAGTTATGTAACTGAATTACCAAAAAAATGGAACTAATTTGTTACAGTTACTGAGAAAAACGTACAgttacttgataaaaaaaatgatgattaCAGAGGGTTATATCACATCCCGATATTTCCACATTCTTCTTTTCCAAATTGCACCAATTGAGACACCGATGTTTAAGACATAACTCTTTTTTGCGttcatgctttattttgaaTCTTTTGTTAGATGCCAGTGGTTCCTGTCACAGACATGCGAAGAATTAAAACCGAAGCTTCTGATTTTAAATCAACCTTGAAACCATTCAAAGTCGTCTGTTTTTCTGGTGACTCTGCTTCCCAGTTAAATGATCGTGATCCTGAATCCATCGCTGGACTACTGTACGGTTAACACCGCCTGCTTTAAACGTCTGAACATTCATAAGAAATGTAGAAACCTAATTAAATGAATActgcatttgaaacatttacacTACTTATTTTAGACAGGGTAACTTGTGCTCTGTAACCTACTGTATAATACATATCATCTTCTGGATTGGTTGTAATGTCGTTTTCCCCCCAGCGCTGACCAGACAGACACATATTGACCGTCTCTAGTCATTAACTAACTCTGGGTCTCCGACGGCTCATTAACTCAGTGTCTGATTTGCCCACGCTTTGGTATTAATATCCCTTGTTGGTCTTAGAACAACATTTCTATCATTTAGATTGTAAGGTGAAGGCTGAGGTTGAAGCTCGAACAAAGCTCTTATCAAGCTGTCACTTCTGTCTGGTTTTAGGGTTAGTGAGCGTTTAGGGTCAGGGTTAGTTCACCCGAACTGACCTTCACACCCCTTATACTCTGTCGAGGTTATAATAACCTTGTTTTATTCGTGCCGTTTTTCCTTTGCGTGTTCAAGGTGTGATTCTTAGCGTCTTCTCCACCAGCAGCTCAGGACCGAAGGtgacattaatattaatcaaacaCCGAAACACGCTCGCTGCCGTTCATTTACTTCTGTTCCTCAGGCTGTTTACGTGAATAATTAGGCTACATTAAGAAATCAttatactctttaaataaagGATTGTGTccaaaagcattgttttttgtttcacagaGCATAAATGCCGGTGTGATCAGAATAACAACTGAGAGTGAATTTCAATGTAAATagccatgtttttttattttatacttttttttaagctgtatGCAAATTAGAATCGTAAACTTCATTTAAAAGGCGGTGtgtttgtaaatgcatgtttaagaAAGCATGTGATGGAGTGAGCAGGACAGGATCTGAAGACGGCAGACGTCTGCTGCCCTCGCCTGGTCCTCACAGAAACACGCCAGGACTTTAATACTACATACATCTGATGCTGAAACCCAACTAACTAGACCtcttaaatcaaacaaaaatgcaaatgtttaattgcatgctttttaatgtatttttcctgtatatattataatgtgaTTGATACAATCtctcatttgatttgatttgattttattatttatataaattgtcaTTGGTGTTAAACTGAGGGGAAGGCCGTTACagtcaatacaaatatttaatgagatattataaaatattatgtaatattcaagataaatattcttttaaacaagcaagtttttcattaacaaaacataaaagataatagcttttttttctgcatttactTAGTGCCCTTAACACACACTAAATCTCTAATAATAAATctctaataataaatagatagtGTAACTATTTTACttactttattaaagttatGTAACCGATCACATTTAATTCTTcccttttttttacttcatcaAATTTCCAACAGAAGTGTTTCACGTCACACTTTGAAAATCCTTCATAATTTGAGTTATAAACATCTGAGTTACAAAATCAGACTTCAGTCAGGCTTCGAGGTTAAACgcagatttaaaatcataacaagAAATAGTTTAATAGTTATTATGCTGTTTTTGAAACCAAATAAGCAGCCTATGTGGAATGctattatgtat

Function

symbol description
adamts16 Predicted to enable metal ion binding activity and metalloendopeptidase activity. Acts upstream of or within basement membrane disassembly and closure of optic fissure. Predicted to be located in extracellular region. Is expressed in several structures, including digestive system; eye; muscle; optic cup; and pleuroperitoneal region. Used to study coloboma.

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 16-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08630 ADAMTS16; a disintegrin and metalloproteinase with thrombospondin motifs 16

RNA

RNA id representative length rna type GC content exon number start site end site
TU162877 False 264 lncRNA 0.23 1 6280028 6280291
XM_043260027.1 True 8555 mRNA 0.47 27 6279709 6339496

Neighbor

gene id symbol gene type direction distance location
rprd2b LOC107757337,LOC107558642,LOC107689000,LOC107689168,LOC107559016,LOC107726232 coding downstream 132 6263504 ~ 6279577 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding downstream 17712 6248919 ~ 6261997 (-)
celf3b LOC107559029,LOC107713913,LOC107689166 coding downstream 379492 5877048 ~ 5900217 (-)
cers2b cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627 coding downstream 406651 5853476 ~ 5873058 (-)
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding downstream 429495 5834157 ~ 5850214 (-)
irx1a irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507 coding upstream 222354 6561850 ~ 6566189 (-)
LOC122360792 NA coding upstream 311453 6650949 ~ 6690226 (-)
sox4b sox4,LOC107732138,LOC107722246 coding upstream 1049220 7388716 ~ 7392318 (-)
cables1 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 coding upstream 1589033 7928529 ~ 7951085 (-)
gata6 gata6,LOC107681823,LOC107708510,LOC107747517,LOC107691181 coding upstream 1638133 7977629 ~ 7984289 (-)
G110227 NA non-coding downstream 71041 6139394 ~ 6208668 (-)
G110224 NA non-coding downstream 71904 6137107 ~ 6207805 (-)
G110223 NA non-coding downstream 75820 6201389 ~ 6203889 (-)
G110199 LOC107726242,LOC107689176,LOC107713897 non-coding downstream 85075 6191010 ~ 6194634 (-)
LOC122359843 NA non-coding downstream 99201 6177403 ~ 6180508 (-)
LOC122360716 NA non-coding upstream 346004 6685500 ~ 6688903 (-)
G110307 NA non-coding upstream 750230 7089726 ~ 7091063 (-)
G110315 NA non-coding upstream 855042 7194538 ~ 7195316 (-)
LOC122360226 NA non-coding upstream 954686 7294182 ~ 7296238 (-)
LOC122360224 NA non-coding upstream 991652 7331148 ~ 7386350 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other downstream 95576 5902577 ~ 6184133 (-)
G110215 NA other downstream 179782 6096675 ~ 6099927 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other downstream 244932 6029208 ~ 6034777 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other downstream 461091 5817040 ~ 5818618 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other downstream 489175 5782667 ~ 5790534 (-)
G110303 NA other upstream 742466 7081962 ~ 7083524 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other upstream 855994 7195490 ~ 7201381 (-)
cdkal1 cdkal1,LOC107722243,LOC107732137,LOC107663002 other upstream 1102402 7441898 ~ 7618596 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other upstream 1488719 7828215 ~ 7830750 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other upstream 1743404 8082900 ~ 8092455 (-)

Expression


Co-expression Network