G110217


Basic Information

Item Value
gene id G110217
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6142004 ~ 6142840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU162898
ACCTTTTTgtgaggtttatttatttttaaagaatccaaataatattacaatgttttgAAGGTAACcaatatacaaaaaacaatcctgtaatttaatttattaacctCAAATAAAGAAAGATAGGCTGTAAAGTACAGGTCATGTAAAGTTTAACATTACAAgaatcaatattattttatagtacaCTTATCATCTTATCTAAATTATATCTAACCAAAagaattaagaaaataaacagaaaaagccCCATAATCccgcacaaaaaaataaaataagattcttacatattgtttcattttattgatgTAATAGCTTAATTTAACAATTCATCCAAAAAGTTATTGTAAGTTTTGCAGCAGATACAGACTTTGCTCTCATTCCCCAGATTTATTTAGATTCTATCAAGATGAACATAAAGAAAGATGAAACAAAAACTTTACTTTCCAGATGTGATTAATATAAAACCATAATATAGATCAACCCTCCACTGAAGTAtaagatcctgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtttctgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtgtgtgtttgttgtaagCAAGATGGACAGCAGGACAAGCATCTTCTTTTAACTTCATCTCTTGCACTCATCTGGTCTCC
>TU162900
ACCTTTTTgtgaggtttatttatttttaaagaatccaaataatattacaatgttttgAAGGTAACcaatatacaaaaaacaatcctgtaatttaatttattaacctCAAATAAAGAAAGATAGGCTGTAAAGTACAGGTCATGTAAAGTTTAACATTACAAgaatcaatattattttatagtacaCTTATCATCTTATCTAAATTATATCTAACCAAAagaattaagaaaataaacagaaaaagccCCATAATCccgcacaaaaaaataaaataagattcttacatattgtttcattttattgatgTAATAGCTTAATTTAACAATTCATCCAAAAAGTTATTGTAAGTTTTGCAGCAGATACAGACTTTGCTCTCATTCCCCAGATTTATTTAGATTCTATCAAGATGAACATAAAGAAAGATGAAACAAAAACTTTACTTTCCAGATGTGATTAATATAAAACCATAATATAGATCAACCCTCCACTGAAGTAtaagatcctgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtgtgtgtttgttgtaagCAAGATGGACAGCAGGACAAGCATCTTCTTTTAACTTCATCTCTTGCACTCATCTGGTCTCC
>TU162901
ACCTTTTTgtgaggtttatttatttttaaagaatccaaataatattacaatgttttgAAGGTAACcaatatacaaaaaacaatcctgtaatttaatttattaacctCAAATAAAGAAAGATAGGCTGTAAAGTACAGGTCATGTAAAGTTTAACATTACAAgaatcaatattattttatagtacaCTTATCATCTTATCTAAATTATATCTAACCAAAagaattaagaaaataaacagaaaaagccCCATAATCccgcacaaaaaaataaaataagattcttacatattgtttcattttattgatgTAATAGCTTAATTTAACAATTCATCCAAAAAGTTATTGTAAGTTTTGCAGCAGATACAGACTTTGCTCTCATTCCCCAGATTTATTTAGATTCTATCAAGATGAACATAAAGAAAGATGAAACAAAAACTTTACTTTCCAGATGTGATTAATATAAAACCATAATATAGATCAACCCTCCACTGAAGTAtaagatgtgtgtgtgtgtgtctgtatctgtgtgtgtgttcctgtgtgtgtgtctgtatctgtgtgtgtgtttctgtgtgtgtgtctgtgtctatgtgtgtgtttctgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtttctgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtgtgtgtttgttgtaagCAAGATGGACAGCAGGACAAGCATCTTCTTTTAACTTCATCTCTTGCACTCATCTGGTCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162898 False 680 lncRNA 0.31 3 6142004 6142840
TU162900 False 642 lncRNA 0.30 3 6142004 6142840
TU162901 True 751 lncRNA 0.32 3 6142004 6142840

Neighbor

gene id symbol gene type direction distance location
celf3b LOC107559029,LOC107713913,LOC107689166 coding downstream 241787 5877048 ~ 5900217 (-)
cers2b cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627 coding downstream 268946 5853476 ~ 5873058 (-)
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding downstream 291790 5834157 ~ 5850214 (-)
mrpl51 mrpl51,LOC107726236,LOC107713917,LOC107559052 coding downstream 319154 5820991 ~ 5822850 (-)
dctn3 dctn3,LOC107713912,LOC107559051,LOC107689179,LOC107726235,LOC107689028,LOC107569444 coding downstream 568204 5571501 ~ 5573800 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding upstream 106079 6248919 ~ 6261997 (-)
rprd2b LOC107757337,LOC107558642,LOC107689000,LOC107689168,LOC107559016,LOC107726232 coding upstream 120664 6263504 ~ 6279577 (-)
irx1a irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507 coding upstream 419010 6561850 ~ 6566189 (-)
LOC122360792 NA coding upstream 508109 6650949 ~ 6690226 (-)
sox4b sox4,LOC107732138,LOC107722246 coding upstream 1245876 7388716 ~ 7392318 (-)
G110216 NA non-coding downstream 683 6140539 ~ 6141321 (-)
G110221 NA non-coding downstream 22237 6118785 ~ 6119767 (-)
G110206 NA non-coding downstream 142643 5997621 ~ 5999361 (-)
G110106 NA non-coding downstream 289242 5852432 ~ 5852762 (-)
G110102 NA non-coding downstream 325131 5815560 ~ 5816873 (-)
LOC122359843 NA non-coding upstream 34563 6177403 ~ 6180508 (-)
G110199 LOC107726242,LOC107689176,LOC107713897 non-coding upstream 48170 6191010 ~ 6194634 (-)
G110223 NA non-coding upstream 58549 6201389 ~ 6203889 (-)
LOC122360716 NA non-coding upstream 542660 6685500 ~ 6688903 (-)
G110307 NA non-coding upstream 946886 7089726 ~ 7091063 (-)
G110215 NA other downstream 42077 6096675 ~ 6099927 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other downstream 107227 6029208 ~ 6034777 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other downstream 323386 5817040 ~ 5818618 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other downstream 351470 5782667 ~ 5790534 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other downstream 896446 5232211 ~ 5245558 (-)
LOC122359836 adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842 other upstream 136869 6279709 ~ 6339496 (-)
G110303 NA other upstream 939122 7081962 ~ 7083524 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other upstream 1052650 7195490 ~ 7201381 (-)
cdkal1 cdkal1,LOC107722243,LOC107732137,LOC107663002 other upstream 1299058 7441898 ~ 7618596 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other upstream 1685375 7828215 ~ 7830750 (-)

Expression


Co-expression Network