G110315


Basic Information

Item Value
gene id G110315
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7194538 ~ 7195316 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU163030
ttcaaatttaggTGACCAACTTTAACCTGATGCAGTGTCTGCATGTGGAAATATTTCCCTCTAAGAAAACTGTGTGAAATGTTTCCAAATTTACCTGAGCAATTTAACTATGATGTGAAATTGTCATGAAGAGCCTTTCAGAATTACAGACGACATGAAAGGACTGGATTTGCCTGAACAGCAGGACATATGATGAGCTTCGGAGTGGTTCAGTATCGTCATATTCCCActctggtttttttttattttatgtttcaaaaatttgcctctttttttccctcaaactTTACAGAAATCCAAGAACTGAACACAAAATGTCTCAAATCTTTGGCCGAAGTTCAAAATAGTACAAACtcatctcaaaaacaaacaactttgCCACAACATTAATTCATGTTAGTTTGTGTTACATGGAGATTGTGTGTTGTGCTtagcaaaaagtgttttattaaactgaaaaccttttattaaaatgaaaaatttataaaaataaatatttggatgTTGGAGACCTCtgtaatatttcaaagaaatataaAGACTAAGAGGGTTTTGAGTACAGCAGCTGTTCACCTGATTTAAAccagctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU163030 True 655 lncRNA 0.35 2 7194538 7195316

Neighbor

gene id symbol gene type direction distance location
LOC122360792 NA coding downstream 504312 6650949 ~ 6690226 (-)
irx1a irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507 coding downstream 628349 6561850 ~ 6566189 (-)
rprd2b LOC107757337,LOC107558642,LOC107689000,LOC107689168,LOC107559016,LOC107726232 coding downstream 914961 6263504 ~ 6279577 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding downstream 932541 6248919 ~ 6261997 (-)
celf3b LOC107559029,LOC107713913,LOC107689166 coding downstream 1294321 5877048 ~ 5900217 (-)
sox4b sox4,LOC107732138,LOC107722246 coding upstream 193400 7388716 ~ 7392318 (-)
cables1 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 coding upstream 733213 7928529 ~ 7951085 (-)
gata6 gata6,LOC107681823,LOC107708510,LOC107747517,LOC107691181 coding upstream 782313 7977629 ~ 7984289 (-)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding upstream 810402 8005718 ~ 8053185 (-)
LOC122360189 LOC107691296,LOC107550438,LOC107747520 coding upstream 872259 8067575 ~ 8074304 (-)
G110307 NA non-coding downstream 103475 7089726 ~ 7091063 (-)
LOC122360716 NA non-coding downstream 505635 6685500 ~ 6688903 (-)
G110223 NA non-coding downstream 990649 6201389 ~ 6203889 (-)
G110199 LOC107726242,LOC107689176,LOC107713897 non-coding downstream 999904 6191010 ~ 6194634 (-)
LOC122359843 NA non-coding downstream 1014030 6177403 ~ 6180508 (-)
LOC122360226 NA non-coding upstream 98866 7294182 ~ 7296238 (-)
LOC122360224 NA non-coding upstream 135832 7331148 ~ 7386350 (-)
G110405 NA non-coding upstream 197750 7393066 ~ 7393325 (-)
G110399 NA non-coding upstream 202742 7398058 ~ 7405996 (-)
G110429 NA non-coding upstream 570571 7765887 ~ 7766257 (-)
G110303 NA other downstream 111014 7081962 ~ 7083524 (-)
LOC122359836 adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842 other downstream 855042 6279709 ~ 6339496 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other downstream 1010405 5902577 ~ 6184133 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other upstream 174 7195490 ~ 7201381 (-)
cdkal1 cdkal1,LOC107722243,LOC107732137,LOC107663002 other upstream 246582 7441898 ~ 7618596 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other upstream 632899 7828215 ~ 7830750 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other upstream 887584 8082900 ~ 8092455 (-)
G110544 NA other upstream 1020713 8216029 ~ 8216595 (-)

Expression


Co-expression Network