cdkal1 (cdkal1,LOC107722243,LOC107732137,LOC107663002)


Basic Information

Item Value
gene id cdkal1
gene name cdkal1,LOC107722243,LOC107732137,LOC107663002
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7441898 ~ 7618596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU163145
TGGAGACGTTCCAACATGGTGTTCTGAGAGCAAAACAACGTGAACGAAACCGTTTGAAGAGAAGAAGAGCTCGCCTTTTCTCCCTCAAACTCCAGCGGTTTTTTCAGCGGTTTTTTGGCACGATTATATTTTTCGTCTCTCGATCATGCCGTCTGCTTGTGACTCTCTGGTCGATGATATCGAGGACATGGTGACTTCTCAGGACCCCACTCCTTATGAGCGGCAGTTTGCCCGGAGAAACATTGTGCCTCGTCCTCGCAAACACAAGCCTCAGTCTGCAGGAGAAGAGCTTCAGACAGACAGtgtGATTCCTGGCACACAGAAGATCTGGGTGAAGACGTGGGGCTGCTCACACAACAGCTCTGATGGAGAGTATATGGCTGGACAGCTGGCAGCCAGTGGATATAAGATCACAGTGTTTCTCGTCAACCAATGACGGCATGACGTTCCAGACGCCTCCGCTCACAGATTCAGAGCTGACCGAGTCCTGGACGCCAGACAGATGTAGAGAGGACCGAGGGACCTGAATGTACTTGACCAGTGTTTGTGAAGCGCTGCACAGATCAGACAGTCTTCCAGAAGAGAAGATGTGAGGAGTTCTCTGTTCAGACTGGACCGAGGGACCGTCGGGAAGCTGCTCCGCTCCGTGTCTCCTACAGATGTGTTGAGTGGACTGTAAATGTCGCTTTGCCTTTCACTCTGTGTTTGGTTTTATTCCCAGCTGATAAACTTTTCAATAAAGCATTGACAGGCTTTTAAATAGGGACGCGCTATAATGGATTCATGAATTAATTTGAGAGATGAGTGTACTTGTGAAGGTTTTGGGAAAAGTCAGTCAGTGACGTTGTCTTCATACGGTCTTCAGTTATCTAGAGGATTATTTGTGGATTTAATTCTTGTTGATGACTGCATTGCTGCGTGGGAGGCC
>TU163147
TGGAGACGTTCCAACATGGTGTTCTGAGAGCAAAACAACGTGAACGAAACCGTTTGAAGAGAAGAAGAGCTCGCCTTTTCTCCCTCAAACTCCAGCGGTTTTTTCAGCGGTTTTTTGGCACGATTATATTTTTCGTCTCTCGATCATGCCGTCTGCTTGTGACTCTCTGGTCGATGATATCGAGGACATGGTGACTTCTCAGGACCCCACTCCTTATGAGCGGCAGTTTGCCCGGAGAAACATTGTGCCTCGTCCTCGCAAACACAAGCCTCAGTCTGCAGGAGAAGAGCTTCAGACAGACAGtgtGATTCCTGGCACACAGAAGATCTGGGTGAAGACGTGGGGCTGCTCACACAACAGCTCTGATGGAGAGTATATGGCTGGACAGCTGGCAGCCAGTGGATATAAGATCACAGTGTTTCTCGTCAACCAATGACGGCATGACGTTCCAGACGCCTCCGCTCACAGATTCAGAGCTGACCGAGTCCTGGACGCCAGACAGATGTAGAGAGGACCGAGGGACCTGAATGTACTTGACCAGTGTTTGTGAAGCGCTGCACAGATCAGACAGTCTTCCAGAAGAGAAGATGTGAGGAGTTCTCTGTTCAGACTGGACCGAGGGACCGTCGGGAAGCTGCTCCGCTCCGTGTCTCCTACAGATGTGTTGAGTGGACTGTAAATGTCGCTTTGCCTTTCACTCTGTGTTTGGTTTTATTCCCAGCT
>XM_043261055.1
AGAGGTTAAAGTGGAGACGTTCCAACATGGTGTTCTGAGAGCAAAACAACGTGAACGAAACCGTTTGAAGAGAAGAAGAGCTCGCCTTTTCTCCCTCAAACTCCAGCGGTTTTTTCAGCGGTTTTTTGGCACGATTATATTTTTCGTCTCTCGATCATGCCGTCTGCTTGTGACTCTCTGGTCGATGATATCGAGGACATGGTGACTTCTCAGGACCCCACTCCTTATGAGCGGCAGTTTGCCCGGAGAAACATTGTGCCTCGTCCTCGCAAACACAAGCCTCAGTCTGCAGGAGAAGAGCTTCAGACAGACAGtgtGATTCCTGGCACACAGAAGATCTGGGTGAAGACGTGGGGCTGCTCACACAACAGCTCTGATGGAGAGTATATGGCTGGACAGCTGGCAGCCAGTGGATATAAGATCACAGAGAATCCATCTGATGCCGATCTGTGGTTGCTGAACAGTTGCACAGTCAAAAACCCAGCAGAAGATCACTTCAGGAACTCTATCAAGAAAGCGCGGGAGCAGAATAAGAAGGTGGTTGTGGCAGGATGTGTTCCACAGGCCCAGCCCAGGACCGACTACCTCAAGGAGCTCAGCATCATTggggtCCAGCAGATCGATCGAGtggtggaggtggtggaggaggctgTTCAGGgtCACTCTGTGCGTCTGCTGGGTCAGAAGAAGGAGAAAGGCAAGCGTCTGGGAGGAGCGAGGCTGGATTTGCCCAAGATCAGGAAGAACCCGCTGATTGAAATCATTTCCATCAATACTGGCTGTCTGAACGCTTGCACGTACTGCAAAACCAAACATGCCAGAGGAGATCTGGCCAGTTACCCCATCGAGGAACTGGTGGAGAGAGCCCGGCAGTCCTTCCAGGGTGAGGTGTGTGAGATCTGGCTGACCAGCGAGGACACAGGCGCGTACGGCAGGGACATCGGCACGGACCTGCCCTCTCTGCTCTGGGAGCTGGTGAAGGAGATCCCGGACGGAGCGATGCTGCGCTTGGGCATGACCAACCCACCCTACATCCTGGAACACCTGGAGGAGATGGCCCGAGTCCTGCAGCACCCGCGGGTCTACTCCTTCCTCCACGTGCCGGTGCAGTCGGCCTCTGACAGCGTCCTGATGGACATGAAGAGAGAGTACTGCTGCGACGACTTCAGACGCGTCTCTGACTTCCTCAAGGAGAGGGTTCCAGGCATCACTATTGCCACGGACATCATCTGTGGTTTCCCAGGAGAGACGGAGGAGGACTTCGAGCAGACGATGGAGCTCGTGAGGCAGTACCGCTTTCCCAGCCTCTTTATCAACCAGTTCTACCCACGACCGGGCTCAGCGGCCAAGATGGAGCAGGTCCCAGCTCACGTGAAGAAGCAAAGAACCAAAGAGCTTTCTGCCCTCTTCCACTCCTACAACCCTTACGACCACAAGATCGGCGAGAGGCAGCGTGTGCTGGTCACCGAGGAGTCCTTTGATTCGCAGTACTACGTCGCTCACAACAAGTTCTACGAGCAGGTCCTGGTGCCCAAGAAGCCAGAATTTAAAGGGAAGATGATCGAGGTGGACATATACGAGGCTGGGAAGCACTACATGAAGGGCCGGCTGGTGGAGGAGGCGCAGGTCTTCACTCCGTCCATCGCTCAGCCTCTTCTGAAGGGACAGGTGTCTGGACTCCCTCAGGAACCGAAGGCGTCCCATCAGAACGGCGTCCGTGCTTCGGTGGTTTCGCCTGCGCTCGTGGGACGGTCCTGGAGGTTTGATAGTGATAAACTCAAGCTGCTGTCATTGGGACTTGCTCTAGCTGCTGTAATCGTGGCTCTTTTGATTGACAAGCTCCACTGACGGCGTAAAGTCAACACAACGTGACGTACGAGGCCTTATAGTGTGACCCGAAAACTTAAACCAGCACTCGAATATAATATCTTGTGTTTAAAGGTCAAATATGTATAAATGAGGCTGGACGGTTTGggacattttagtttttaactgCTAATTAAAGacttgtttaaattttaaaggttgaaacttgtttttctttccagtGACAGCATCCATTGTGAcgtttttgtgttctttttttggtcaagtacttttttttggtttgtttgtttgtttgcagaaATTGAAGCCTCTTTGCCTACGAACAAGGACAGCTTGAATGCGTCTTTGGCTTTCTGTTCATTTTCAATCCCAGCAGTCATTCATTCTCAGGCCAGGTGTCTCACTGTTGGCTTTGGGCTAAGAGCAACAGACTCTTCCCGTCTTTGTTCCCAGCATAAAGCACGTCTAATAAATGAGACTCCACACTCTCA

Function

symbol description
cdkal1 Predicted to enable N6-threonylcarbomyladenosine methylthiotransferase activity. Acts upstream of or within pancreas regeneration and type B pancreatic cell development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in diabetes mellitus; gestational diabetes; and type 2 diabetes mellitus. Orthologous to human CDKAL1 (CDK5 regulatory subunit associated protein 1 like 1).

NR:

description
CDK5 regulatory subunit-associated protein 1-like 1

GO:

id name namespace
GO:0009451 RNA modification biological_process
GO:0016740 transferase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1

RNA

RNA id representative length rna type GC content exon number start site end site
TU163145 False 928 TUCP 0.48 4 7610629 7618585
TU163147 False 723 TUCP 0.51 4 7610834 7618585
XM_043261055.1 True 2318 mRNA 0.52 17 7441898 7618596

Neighbor

gene id symbol gene type direction distance location
sox4b sox4,LOC107732138,LOC107722246 coding downstream 49580 7388716 ~ 7392318 (-)
LOC122360792 NA coding downstream 751672 6650949 ~ 6690226 (-)
irx1a irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507 coding downstream 875709 6561850 ~ 6566189 (-)
rprd2b LOC107757337,LOC107558642,LOC107689000,LOC107689168,LOC107559016,LOC107726232 coding downstream 1162321 6263504 ~ 6279577 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding downstream 1179901 6248919 ~ 6261997 (-)
cables1 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 coding upstream 309933 7928529 ~ 7951085 (-)
gata6 gata6,LOC107681823,LOC107708510,LOC107747517,LOC107691181 coding upstream 359033 7977629 ~ 7984289 (-)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding upstream 387122 8005718 ~ 8053185 (-)
LOC122360189 LOC107691296,LOC107550438,LOC107747520 coding upstream 448979 8067575 ~ 8074304 (-)
mpp7b LOC107681820 coding upstream 486630 8105226 ~ 8143954 (-)
G110399 NA non-coding downstream 35902 7398058 ~ 7405996 (-)
G110405 NA non-coding downstream 48573 7393066 ~ 7393325 (-)
LOC122360224 NA non-coding downstream 55548 7331148 ~ 7386350 (-)
LOC122360226 NA non-coding downstream 145660 7294182 ~ 7296238 (-)
G110315 NA non-coding downstream 246582 7194538 ~ 7195316 (-)
G110429 NA non-coding upstream 147291 7765887 ~ 7766257 (-)
G110437 NA non-coding upstream 174211 7792807 ~ 7793387 (-)
G110449 LOC107708546,LOC107681784,LOC107691124,LOC107566457 non-coding upstream 231083 7849679 ~ 7904593 (-)
G110452 NA non-coding upstream 265336 7883932 ~ 7901008 (-)
G110453 LOC107681784,LOC107708546,LOC107747514,LOC107566457,LOC107691124 non-coding upstream 269199 7887795 ~ 7889295 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other downstream 240517 7195490 ~ 7201381 (-)
G110303 NA other downstream 358374 7081962 ~ 7083524 (-)
LOC122359836 adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842 other downstream 1102402 6279709 ~ 6339496 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other downstream 1257765 5902577 ~ 6184133 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other upstream 209619 7828215 ~ 7830750 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other upstream 464304 8082900 ~ 8092455 (-)
G110544 NA other upstream 597433 8216029 ~ 8216595 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other upstream 680193 8298789 ~ 8302245 (-)
G110556 NA other upstream 693669 8312265 ~ 8316685 (-)

Expression


Co-expression Network