G111329 (triob,LOC107746974,LOC107551199,LOC107684227,LOC107601652,LOC107751902)


Basic Information

Item Value
gene id G111329
gene name triob,LOC107746974,LOC107551199,LOC107684227,LOC107601652,LOC107751902
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10791564 ~ 10793616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU164374
TGAGGGTTCCATCGGGGTAGTCGGGAATGATGATGGAGGTGTGACCCAGAACGTAGCCGGGGATCCAGCCCTCGGCTGCTGGGCCTTGTTCTGTGGCGGCACGGAAAACTAGAAACATGTTTTGCTGGTTAGAGGCCAATATCTGCACAACCTCTCCTTGATACACGCTGATCAGAGAGCGAGAATAAAGCAAGCGAGAGCAGTtctaaaaaaagattaacaatTAGTTTACAAGAACCTCTTACGTTTACACCAAAGAGTTGTTCACACTGACAGTTCACAGCTAAATTGCTGATGGTTTTCCAGACTCTGTACTTTTGGTTAAGTATATGATGAGGTGGATAAGCTCAGATGTCTACCACTGATGGTTACCACAACACTTTGAACTCTGTAGCACTATTGATCATGTTTCTTCTAATTGCTTactatcattaaaaatgaatgactgcTGGCCTCTTTGTTGCTGCAAATTGCTTTCAGTGTGATTACCCCTTAAGACTATTGGTTAAATAAGGAAATCTAACACCCTCAAAGACACCATGAAATCAACATTGGAGTTTTGTggtcttttaatatatatagttaatatgcTAGTGGACCGCTGAAAGTTCTCTTATCCACTCATGTACACAAATGTTTTATCCAATAAAATGCTCTCTGGAATGAGAATATACCTTCCCCTAATCCTCATACTTGCTTCTGATGCAAATAAAATCTacttgctatttaaaaaaaaaaaaggaaaagtctCCTGATATGTCTCTCTCCAAATTCCTCTGTCAATAGTTAACAAATCAGCACAGGGCCTTGACACtccaatatattttaaatggattacaccaaaaatcctaaaaaaaagctgtaagcaggttaaaaagaaaaagagttaGTAATTGTTAGTTGGCTGTGGTTTACGTGCTCCTTATGCTTGCATATTAGGTCTTCTCAGGCAGTTAGAGAAAGAACATCCTGCCAGTTCAGAGCAGATAGAGTCAGCAGAAATAGTCAACGGATGTACAGAGTTTCTGAGAAACTCTCAAGGAGTTATCCTGGTTAACAGTGCATGTTGTTAGTTGCTCAGCACAGTCAAACCAGGCCAGTTAATATGCACAAAAGCCTGTGTGAATCTTCTTAGTTCCAAGTGaatgcacatacagtataccCCAGCGGGTTAGTATAAAGCCAGAGGTGGAGGGGAAGCAGGACTAGGCCTCACTGAAGCCAGGAGCTAGAGTTTGGCTCTTACCCCATTGCTGTGAGTGGAATGCAGGGACTGCTCACTGGTGGAGGAGCAAGTACTGATGCGGTCCAACTCCTTACTGTGGGTGGAGTGCCTGCGAGTCTGACACTGGTTGCGACTCAACGTGTCACTCTGCTCTGTGTAAGAGCCAGGCCTGCCAGTAGGTGAGACTGGCACTGAGGCCCAAAACGGGGAGCCCTTCTGGACTGAAAAGTTCTGAGGGTTCAAGGGGGAGAGAATTGGCGAAGGGACTCTGAGACGGGGCTTTGTTAGGGTGAGAGACAGGGGTGCAACTGTGGCTCTTGGAATGGGTGCTTCTTCGCGTAGCTCCTTCAAGGGGCTCTCCAGGACCCGCATCCTAGGGACCTCACCGTTTAGGTCCTGGTCTGGAAGAGGACACGTACCTGAAGTGCGGTCATCTGGGGCGGGGGCGTGGTGGTGCTGCACGGGTTGAGGGAGACGAGAAGAAGGTTGAGGGATTCGGGAACCTCGGGACCGAGAGCCACAGCTGGAACCCATGGCAGAGCTGCTGCTACCCCCCGGAAGTCCACTGCTGCTGGGTCCACCCAGAACGCTTGCCCCAACATGATTCCGTTGGTATTCAATGGGTGAAGTCAGTGCT

Function

symbol description
triob Predicted to enable ATP binding activity; guanyl-nucleotide exchange factor activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within axon guidance; central nervous system development; and protein phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability and autosomal dominant non-syndromic intellectual disability 44. Orthologous to human TRIO (trio Rho guanine nucleotide exchange factor).

NR:

description
PREDICTED: triple functional domain protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164374 True 1862 lncRNA 0.47 2 10791564 10793616

Neighbor

gene id symbol gene type direction distance location
colec10 LOC107738939,LOC107574455,LOC107677951 coding downstream 203846 10571751 ~ 10587718 (-)
mal2 mal2,LOC107757438,LOC107571097,LOC107738940,LOC107677950,LOC107683116 coding downstream 221767 10553160 ~ 10569797 (-)
LOC122361025 LOC107757443,LOC107691877 coding downstream 369285 10408015 ~ 10422279 (-)
prpf3 prpf3,LOC107677690,LOC107719195 coding downstream 388528 10391834 ~ 10403036 (-)
ice1 LOC107746963,LOC107691875,LOC107566277,LOC107735420 coding downstream 404970 10372411 ~ 10386594 (-)
LOC122361028 cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204 coding upstream 14721 10808337 ~ 10811017 (-)
LOC122361032 LOC107746978,LOC107684223,LOC107551206,LOC107704083,LOC107751909,LOC107601659 coding upstream 24275 10817891 ~ 10823189 (-)
LOC122360214 LOC107752837,LOC107662667,LOC107581612 coding upstream 643757 11437373 ~ 11453509 (-)
LOC122360822 LOC107596715 coding upstream 699483 11493099 ~ 11501213 (-)
skap2 skap2,LOC107743153,LOC107684555,LOC107685583 coding upstream 804715 11598331 ~ 11614258 (-)
G111298 NA non-coding downstream 61149 10730168 ~ 10730415 (-)
G111097 NA non-coding downstream 915900 9875392 ~ 9875664 (-)
G111048 NA non-coding downstream 1036584 9754315 ~ 9754980 (-)
G111045 NA non-coding downstream 1115059 9674864 ~ 9676505 (-)
G111025 NA non-coding downstream 1167445 9623700 ~ 9624119 (-)
LOC122361039 NA non-coding upstream 130499 10924115 ~ 10924764 (-)
G111393 NA non-coding upstream 366223 11159839 ~ 11160056 (-)
G111420 NA non-coding upstream 431570 11225186 ~ 11225409 (-)
G111421 NA non-coding upstream 432166 11225782 ~ 11226073 (-)
G111437 NA non-coding upstream 467129 11260745 ~ 11261048 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 27259 10745576 ~ 10764305 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other downstream 888583 9877211 ~ 9902981 (-)
G110974 NA other downstream 1518959 9270971 ~ 9272605 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other downstream 1639381 9145930 ~ 9152183 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 2155342 8633350 ~ 8636222 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 63904 10857520 ~ 10883424 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other upstream 476004 11269620 ~ 11286432 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other upstream 539559 11333175 ~ 11386993 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other upstream 617062 11410678 ~ 11411777 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 1072064 11865680 ~ 11867315 (-)

Expression


Co-expression Network