LOC122360812 (cobl,LOC107746964,LOC107684220,LOC107551210)


Basic Information

Item Value
gene id LOC122360812
gene name cobl,LOC107746964,LOC107684220,LOC107551210
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10857520 ~ 10883424 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU164396
CGCGCGCTCGAGAGACGCGGGAACGGCGCTGCCTGGTGGACGGATTAGACCAGGATCGTGAACTCCAGTGCCGCTGTTGTCTGTTTATGAAGCCGAATCCTCGTGACACTTATATGAATAAGTGTGAACCTGAATTCCGATGTCCCCGCCTGGACGTACGAGTAATAAATTGCCTTGATACAAAGCGGATTTAGTTTATGACAGATGAATTTTGGAGACGCTACCATCAGACCTCCTGTAGGGAGGAGAATGAAGGCCAAGGCCCCACCTCCACCTCAACCCCCTCAGCCTGCCCCCCGCAGGATCTTCCGTAATGCTGTTCCTGATGGAGGAGGATCTTCAGTGGGAGACAGCAAGGAAAACATGCTTCGACCCTCTGTGGACCTCCATATCAGTCTGCCTTCAGGGTATCAGACCACCGTCAATGTGGATGGCAGAAAAGCTCTGATGGATTTGTTGGTGGATCTGTGCAGTCAGTATCATCTGAATCCAACATATCATACCCTGGAGCTGCTGTCACCCGATGCTCAACCTGTCATTTTTAAGCCCAACGCCCTGCTGGGCGCC
>TU164397
CGAGGATCATAGACGTTCGCCTTCTGTGTGGTTCCTGGACACGGACTACAGACAGACTCTCACGGCTGCTTTGACAGTAGAGGAGAATGAAGGCCAAGGCCCCACCTCCACCTCAACCCCCTCAGCCTGCCCCCCGCAGGATCTTCCGTAATGCTGTTCCTGATGGAGGAGGATCTTCAGTGGGAGACAGCAAGGAAAACATGCTTCGACCCTCTGTGGACCTCCATATCAGTCTGCCTTCAGGGTATCAGACCACCGTCAATGTGGATGGCAGAAAAGCTCTGATGGATTTGTTGGTGGATCTGTGCAGTCAGTATCATCTGAATCCAACATATCATACCCTGGAGCTGCTGTCACCCGATGCTCAACCTGTCATTTTTAAGCCCAACGCCCTGCTGGGCGCC
>XM_043261674.1
catatttatgttataagAATTCTCCTGATAATCACGTTCAATGTATTTCTTTACAGTTACGCCAATGTTAACCGTTATTTAGCTAAACGCCTACAGTCGGTGCGAGTTATTTATCGACAGCCTCGCTATATCAGTGCTGTTTACTGTAAAGCACACGCGCTTCCAGCGGGTGCGTTCTCGCGCACAGAATTCCTAGCTCGGGCTGCCGTTGAGCGCGCGCTCGAGAGACGCGGGAACGGCGCTGCCTGGTGGACGGATTAGACCAGGATCGTGAACTCCAGTGCCGCTGTTGTCTGTTTATGAAGCCGAATCCTCGTGACACTTATATGAATAAGTGTGAACCTGAATTCCGATGTCCCCGCCTGGACGTACGAGTAATAAATTGCCTTGATACAAAGCGGATTTAGTTTATGACAGATGAATTTTGGAGACGCTACCATCAGACCTCCTGTAGGGAGGAGAATGAAGGCCAAGGCCCCACCTCCACCTCAACCCCCTCAGCCTGCCCCCCGCAGGATCTTCCGTAATGCTGTTCCTGATGGAGGAGGATCTTCAGTGGGAGACAGCAAGGAAAACATGCTTCGACCCTCTGTGGACCTCCATATCAGTCTGCCTTCAGGGTATCAGACCACCGTCAATGTGGATGGCAGAAAAGCTCTGATGGATTTGTTGGTGGATCTGTGCAGTCAGTATCATCTGAATCCAACATATCATACCCTGGAGCTGCTGTCACCCGATGCTCAACCTGTCATTTTTAAGCCCAACGCCCTGCTGGGCGCCTGGACGTCTCCTGCGCCTGATCAAAGAACGAGTGCTGGAGGACAAGGTGATCCGAAACCTCCACCCAAGATGCCAGAGCCTGGCTGGCTGGCCCCTCTCTTGCTCCTCTCCCACGTGTCCGACCTCCGGGCAAAAAAAACTGTGCGTTTGGTGGTAAACTATCACCGCAGTCAGAAAGCAGTTGTTCGTGTAAATCCACTGGTCCCACTGCATACCCTGGTGCCTGTGATTTGTCAGAAGTGCGAGTTTGACTCGGCCCATGTCTTGCTGTTCAAAGACAATATCAGCCATCAACAGCTGGACCTGGACAAGTGCCTGAGCGAGCTGGGTATCAGAGAACTCTATGTGCTGGATCAAACACTAGTTCTCCAGCCTAAAATGGCTTCGACACCTGCCCTGAACTACTCAGCTGAATCTCTTCACTCCAACAGTCTGAGTGGATCAGAGAAAAAGAGCCTGCTGGGCTTCCTCAAGTTTAATCGCAGGAAATCAAAGACTGAAGATCAGTCCTCTGAGGACATGGACAGTCTTGATGATGATAGTGTTGTTGACATTGCAGACACTAACATTAATGCGGATCCTTCTACTTTCAGACCTGCCAACCTGTAA

Function

symbol description
cobl Predicted to enable actin monomer binding activity. Acts upstream of or within cilium assembly and embryonic organ morphogenesis. Predicted to be located in several cellular components, including cytoskeleton; cytosol; and ruffle. Is expressed in several structures, including Kupffer's vesicle; midbrain hindbrain boundary neural rod; nervous system; pronephros; and trunk. Orthologous to human COBL (cordon-bleu WH2 repeat protein).

NR:

description
PREDICTED: protein cordon-bleu-like isoform X1

GO:

id name namespace
GO:0060088 auditory receptor cell stereocilium organization biological_process
GO:0003146 heart jogging biological_process
GO:0060271 cilium assembly biological_process
GO:0001947 heart looping biological_process
GO:0001726 ruffle cellular_component
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164396 False 567 TUCP 0.53 4 10861951 10883211
TU164397 False 404 TUCP 0.54 3 10861951 10866428
XM_043261674.1 True 1389 mRNA 0.50 10 10857520 10883424

Neighbor

gene id symbol gene type direction distance location
LOC122361032 LOC107746978,LOC107684223,LOC107551206,LOC107704083,LOC107751909,LOC107601659 coding downstream 34331 10817891 ~ 10823189 (-)
LOC122361028 cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204 coding downstream 46503 10808337 ~ 10811017 (-)
colec10 LOC107738939,LOC107574455,LOC107677951 coding downstream 269802 10571751 ~ 10587718 (-)
mal2 mal2,LOC107757438,LOC107571097,LOC107738940,LOC107677950,LOC107683116 coding downstream 287723 10553160 ~ 10569797 (-)
LOC122361025 LOC107757443,LOC107691877 coding downstream 435241 10408015 ~ 10422279 (-)
LOC122360214 LOC107752837,LOC107662667,LOC107581612 coding upstream 553949 11437373 ~ 11453509 (-)
LOC122360822 LOC107596715 coding upstream 609675 11493099 ~ 11501213 (-)
skap2 skap2,LOC107743153,LOC107684555,LOC107685583 coding upstream 714907 11598331 ~ 11614258 (-)
hoxa2b hoxa2b,LOC107685611,LOC107684556,LOC107550809,LOC107743221,LOC107744722,LOC107596758 coding upstream 736089 11619513 ~ 11630905 (-)
hoxa9b hoxa9b,LOC107743222,LOC107684557,LOC107744723,LOC107685612,LOC107550810,LOC107596757 coding upstream 745675 11629099 ~ 11633344 (-)
G111329 triob,LOC107746974,LOC107551199,LOC107684227,LOC107601652,LOC107751902 non-coding downstream 63904 10791564 ~ 10793616 (-)
G111298 NA non-coding downstream 127105 10730168 ~ 10730415 (-)
G111097 NA non-coding downstream 981856 9875392 ~ 9875664 (-)
G111048 NA non-coding downstream 1102540 9754315 ~ 9754980 (-)
G111045 NA non-coding downstream 1181015 9674864 ~ 9676505 (-)
LOC122361039 NA non-coding upstream 40691 10924115 ~ 10924764 (-)
G111393 NA non-coding upstream 276415 11159839 ~ 11160056 (-)
G111420 NA non-coding upstream 341762 11225186 ~ 11225409 (-)
G111421 NA non-coding upstream 342358 11225782 ~ 11226073 (-)
G111437 NA non-coding upstream 377321 11260745 ~ 11261048 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 93215 10745576 ~ 10764305 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other downstream 954539 9877211 ~ 9902981 (-)
G110974 NA other downstream 1584915 9270971 ~ 9272605 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other downstream 1705337 9145930 ~ 9152183 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 2221298 8633350 ~ 8636222 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other upstream 386196 11269620 ~ 11286432 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other upstream 449751 11333175 ~ 11386993 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other upstream 527254 11410678 ~ 11411777 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 982256 11865680 ~ 11867315 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 1480361 12363785 ~ 12378449 (-)

Expression


Co-expression Network