G9091


Basic Information

Item Value
gene id G9091
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 13926562 ~ 13928552 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU10016
TGGGTGAAATAACACTTTAATGGTTGCTACAAAGAGTCAAGAATAGAGGTTACACACAAAAGGACATAAAAATAAAAGCAGGTCAAACTAAACATGAACATTCATTAGAACATTCATTACTGCATTAGTCTCAAAAAAGGATGATTTATATGCTATTAGGCACTATTTACTACATGTAACACTGAGAACATAGTAGTCTTCAGAACTTTATTGTTAGACTGCAAAGTGCTGGGCACCAGCATGAAGAAATAAAGCTGATATAAATGACAGAAGATTCTGAAGTGGTTTGATAGTTGCAGGTGGTCATCAACTCCATCAGCATTAGAAGTACTTTGTGGGATCTGATTTGTCACACATTTGAACGTGAACATGGGAAGTGATGCCAGGATAAACCTTCTGCATTGGGAGCAGACTTCCGATCTTCTGCCCTTTTTTCAGGGTCCCAGAGTAACGGTCTGGCTTAACGTAGAACAGCTTGAAGCAGAGACCTGCCAAGCAGATATAAGATTATTGTAAGGTTATGCTTAAATCTTATTCCACATGTCTATATTATTATTAGTAGTAGTATTTTATCAAGCAAACACATTATTTTCCACAAACATGATATGACCTATAGTCTCTAAAAGAAACTTTTGCTACATTGCTATTCATGCTTTAGAACATTTAACATTTGGCACCTTCTCCGCTCAAGTTAATGCCATCATTGATAGCATTGTTCTTTATGTATGGTGCAGCTTTGCCATTCAGCTTCACATCAAATGGAGCAAGAACTGTGTCTCCATCAGCACACACAATGTCAAGACCCATATGTTTCCGATTCCCACTGCGGCTGGCTCCATAGTCTCCACAGCCATACTTTTTATCACATCCTCTTTTACGGTTACTTGGGTTACCTCTGCAGAGGGTGCCAAATTTCACTGTGAAATGAAAAGATTTTTAACTCATCTCTGTTTTACTTTATGTTTCTTGTCTGTCTTTATATTTGTCTTCCTGTTTGTCTTTTTCTTCATTTACATTACATACCTTGGCTAGCATCAACAAGAGAGCTGCAAAGCACTGAAAACGAGACACACATTTGAGACTTTAATTTGCATAATTAATATATTTCAATAATAATTTATATATATATATATATATATATATATATATATTGGATTGTTTTTGCAAGGTTTACTTTGCACGTTTTTATCCTTTTCAGTGTTTATTAATGACACCACCAAAAAAACATCAGTAAAATTCATCAAATTTAAAAATGTTAACAAAAAAACTCAAAATTTAGATTTAAATGTAGTTAAATGTAATTAAAATAAATGTACATTTTAGAACATAAACATTGTCAAAATTAATTATGCTTCATTTGTGCATAGACTCAATGTTTTCTTATCTTCCTCCTTTACAAGTTTTAGAATAAAATTGCAGGCAGTGATGCATTAAGTTAAATTGTAATTTCTCACCAGCCAAAAGCAGAAAACTGAGAAGGATGTAAAGTCTCATGATGCTATAAGTGTTTGTTTTCAGATGTTTCTTTCTCCGCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU10016 True 1537 lncRNA 0.34 2 13926562 13928552

Neighbor

gene id symbol gene type direction distance location
CI01000000_13906139_13911457 NA coding downstream 14422 13905955 ~ 13912140 (-)
CI01000000_13865446_13896796 RNF130 coding downstream 29766 13864272 ~ 13896796 (-)
CI01000000_13857002_13862576 NA coding downstream 63986 13856991 ~ 13862576 (-)
CI01000000_13689569_13694664 AGA coding downstream 231898 13689569 ~ 13694664 (-)
CI01000000_13676092_13680653 ASB5A coding downstream 245909 13675911 ~ 13680653 (-)
CI01000000_13937628_13939186 FGL1 coding upstream 8615 13937167 ~ 13939186 (-)
CI01000000_13941671_13945038 ASAH1A coding upstream 12547 13941099 ~ 13945462 (-)
CI01000000_14084856_14094385 CYP4V7 coding upstream 156218 14084770 ~ 14094385 (-)
CI01000000_14096753_14113883 NA coding upstream 167120 14095672 ~ 14113883 (-)
CI01000000_14191335_14195457 NA coding upstream 262755 14191307 ~ 14195669 (-)
G9082 NA non-coding downstream 79094 13846803 ~ 13847468 (-)
G9080 NA non-coding downstream 80953 13845323 ~ 13845609 (-)
G9062 NA non-coding downstream 106585 13814654 ~ 13819977 (-)
G9053 NA non-coding downstream 130964 13788006 ~ 13795598 (-)
G9025 NA non-coding downstream 213032 13713210 ~ 13713530 (-)
G9094 NA non-coding upstream 608 13929160 ~ 13930613 (-)
G9098 NA non-coding upstream 34632 13963184 ~ 13963413 (-)
G9099 NA non-coding upstream 34931 13963483 ~ 13963758 (-)
G9101 NA non-coding upstream 37004 13965556 ~ 13965763 (-)
G9135 NA non-coding upstream 106390 14034942 ~ 14035182 (-)
G9036 NA other downstream 199472 13726800 ~ 13727090 (-)
G8699 NA other downstream 615133 13272585 ~ 13311429 (-)
G8125 NA other downstream 2885653 11040269 ~ 11040909 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other downstream 3098967 10824324 ~ 10825464 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other downstream 3512049 10407395 ~ 10409950 (-)
G9602 NA other upstream 412450 14341002 ~ 14346534 (-)
CI01000000_14200000_14436182 TENM2 other upstream 456805 14200000 ~ 14436253 (-)
G10672 NA other upstream 2297735 16226287 ~ 16231126 (-)
CI01000000_16354158_16360016 NA other upstream 2433956 16353959 ~ 16360213 (-)
G11107 NA other upstream 2738566 16667118 ~ 16667947 (-)

Expression


Co-expression Network