G112410 (clstn3,LOC107744281,LOC107724674,LOC107700197,LOC102784285)


Basic Information

Item Value
gene id G112410
gene name clstn3,LOC107744281,LOC107724674,LOC107700197,LOC102784285
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13733188 ~ 13734148 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU165907
CTTTCCATTTATACCTCCATTGGGTTCACGATGATGGTGAGGGCCGAATCGTCCCATTGGTTGCTGCCTTCTTTGCCTCCGCCCCTTGCTCCTTCACCACGGCGATGGATGGAACGGATGCGAAAGACACCAAGAATCACCATGACAACCAAGAAACCCACGCACACCATGATGATTACAGTCGCAGCTCCTGGAACAACTGTACAcacgaggagagagagaaattatattattctttatatttctttatatatctTCAAATATTCTCTGTTTCAGACCTCAAAGccttctctgaaaaaaaaaaaagacagtttacTCAACATTATGAATAGGAGAAAAATTTGATATACCAattaataaaccaataaatgtCCGACTATGTACCTGAGTTGCGGTGTGGATTGGGGAGTGTGTGTCCACTCAGTTCTCCGGTGTGATGGGACGGGTGGAGGAACTGCTGCTGGGACGCCAGCAGGTGAGACGGATGGTACAGACTGTCCAGAGAGTGCAGGAAGTTCACCTGAGCAAGTGTAGGAGAAAACTCCAGCGTGAGCTCGTTGCTGGTGTACCGGCCGTTCATCTCTGAGCACGACAGACGAAACCTTCTCTCAAAACGAGCAGAGCCCTTTGCTAAGCGATAGCGAATGGAGCGCAGCACATCCTCGTACACAGAGATAGACTCCGCTCCTGAAAGAGAAGAATTCAAGTTTAGCGGTTTTTCTATTTCctgttaaataaatgagaaggtatctattatgtatttttgctaaaatattttaaataacacttaTTGAATTAACTGCTTTTGGGGTGAGCAAGATGCATTGAGTTTTCCAAAAGTACTGtacagcataaaaataataatcaaagtaaa

Function

symbol description
clstn3 Predicted to enable calcium ion binding activity. Acts upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in Golgi membrane; cell projection; and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface and postsynaptic membrane. Is expressed in forebrain; hindbrain; midbrain; spinal cord; and telencephalon. Orthologous to human CLSTN3 (calsyntenin 3).

NR:

description
PREDICTED: calsyntenin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165907 True 874 lncRNA 0.43 2 13733188 13734148

Neighbor

gene id symbol gene type direction distance location
tpi1b tpi1,tpi1b,LOC107672981,LOC107724698,LOC107700200,LOC107744284 coding downstream 31445 13694759 ~ 13701743 (-)
si:dkey-26c10.5 LOC107549484,LOC107724725,LOC107700203,LOC107672979 coding downstream 54930 13673756 ~ 13678258 (-)
rasip1 rasip1,LOC107549479,LOC107724795,LOC107744292,LOC107598383 coding downstream 128447 13592032 ~ 13604741 (-)
il11a NA coding downstream 159593 13565402 ~ 13573595 (-)
znf628 LOC107724809,LOC107549478,LOC107744293,LOC107598382,LOC107672962,LOC107692578 coding downstream 168961 13556250 ~ 13564227 (-)
gnb3a gnb3a,LOC107549492,LOC107672997,LOC108432288,LOC103042898,LOC102782474 coding upstream 19266 13753414 ~ 13760343 (-)
p3h3 p3h3,LOC107700158,LOC107724912 coding upstream 29856 13764004 ~ 13770786 (-)
cxcr3.3 NA coding upstream 101372 13835520 ~ 13838704 (-)
cxcr3.2 LOC107700152,LOC107551671,LOC107717417,LOC107598452,LOC107671173,LOC107755594 coding upstream 107160 13841308 ~ 13844368 (-)
ceacam1 NA coding upstream 132232 13866380 ~ 13875529 (-)
G112363 leng8,LOC107724921,LOC107700201,LOC107744285,LOC107672965,LOC107549486,LOC107598384 non-coding downstream 39225 13688506 ~ 13693963 (-)
G112390 NA non-coding downstream 73718 13659005 ~ 13659470 (-)
G112377 NA non-coding downstream 113852 13618687 ~ 13619336 (-)
G112361 NA non-coding downstream 123854 13606631 ~ 13609334 (-)
G112350 NA non-coding downstream 189877 13534721 ~ 13543311 (-)
G112369 NA non-coding upstream 43121 13777269 ~ 13778805 (-)
G112426 NA non-coding upstream 50867 13785015 ~ 13786453 (-)
G112447 NA non-coding upstream 166716 13900864 ~ 13901076 (-)
G112448 NA non-coding upstream 166989 13901137 ~ 13901613 (-)
G112449 NA non-coding upstream 175176 13909324 ~ 13909736 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 49279 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 1354739 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1865873 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 2321411 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 2346195 11333175 ~ 11386993 (-)
G112478 NA other upstream 500406 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 764115 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 848331 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1165034 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 1174472 14908620 ~ 14913646 (-)

Expression


Co-expression Network