Gene
RNA
| Item | Value |
|---|---|
| gene id | G9136 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 14035245 ~ 14035575 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU10066 | True | 331 | lncRNA | 0.34 | 1 | 14035245 | 14035575 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000000_13941671_13945038 | ASAH1A | coding | downstream | 89783 | 13941099 ~ 13945462 (-) |
| CI01000000_13937628_13939186 | FGL1 | coding | downstream | 96059 | 13937167 ~ 13939186 (-) |
| CI01000000_13906139_13911457 | NA | coding | downstream | 123105 | 13905955 ~ 13912140 (-) |
| CI01000000_13865446_13896796 | RNF130 | coding | downstream | 138449 | 13864272 ~ 13896796 (-) |
| CI01000000_13857002_13862576 | NA | coding | downstream | 172669 | 13856991 ~ 13862576 (-) |
| CI01000000_14084856_14094385 | CYP4V7 | coding | upstream | 49195 | 14084770 ~ 14094385 (-) |
| CI01000000_14096753_14113883 | NA | coding | upstream | 60097 | 14095672 ~ 14113883 (-) |
| CI01000000_14191335_14195457 | NA | coding | upstream | 155732 | 14191307 ~ 14195669 (-) |
| CI01000000_14195942_14196532 | NA | coding | upstream | 160252 | 14195808 ~ 14196534 (-) |
| CI01000000_14200000_14436182 | TENM2 | coding | upstream | 164425 | 14200000 ~ 14436253 (-) |
| G9135 | NA | non-coding | downstream | 63 | 14034942 ~ 14035182 (-) |
| G9101 | NA | non-coding | downstream | 69482 | 13965556 ~ 13965763 (-) |
| G9099 | NA | non-coding | downstream | 71487 | 13963483 ~ 13963758 (-) |
| G9098 | NA | non-coding | downstream | 71832 | 13963184 ~ 13963413 (-) |
| G9094 | NA | non-coding | downstream | 104632 | 13929160 ~ 13930613 (-) |
| G9647 | NA | non-coding | upstream | 95436 | 14131011 ~ 14137401 (-) |
| G9794 | NA | non-coding | upstream | 664136 | 14699711 ~ 14699932 (-) |
| G9821 | NA | non-coding | upstream | 739684 | 14775259 ~ 14775471 (-) |
| G9815 | NA | non-coding | upstream | 849277 | 14884852 ~ 14949217 (-) |
| G9036 | NA | other | downstream | 308155 | 13726800 ~ 13727090 (-) |
| G8699 | NA | other | downstream | 723816 | 13272585 ~ 13311429 (-) |
| G8125 | NA | other | downstream | 2994336 | 11040269 ~ 11040909 (-) |
| CI01000000_10824957_10825464 | MMGT1, TMM32 | other | downstream | 3207650 | 10824324 ~ 10825464 (-) |
| CI01000000_10407402_10409508 | UBL3B, UBL3.S, UBL3 | other | downstream | 3620732 | 10407395 ~ 10409950 (-) |
| G9602 | NA | other | upstream | 305427 | 14341002 ~ 14346534 (-) |
| G10672 | NA | other | upstream | 2190712 | 16226287 ~ 16231126 (-) |
| CI01000000_16354158_16360016 | NA | other | upstream | 2326933 | 16353959 ~ 16360213 (-) |
| G11107 | NA | other | upstream | 2631543 | 16667118 ~ 16667947 (-) |
