si:ch211-105c13.3 (si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771)


Basic Information

Item Value
gene id si:ch211-105c13.3
gene name si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14899182 ~ 14904907 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU166910
TGAtttgatggggaaaaaaagcaacttGGGAAGATTGGAATTCGCAGAAGAGGCATTTTTATAGGCATTGTACTGTCTTTAGTTAGAAGAGGCGAGAATCGGCAGAAGAAAAGTAGTTACAAATATGGAGGGTGCCATTAAAACAGTTGTCATGCAGTTCCTGTCTTCTGCACGGGAAAAGAGAACCTGGGTGGAAAGAACTTCCAAAAGTTAGTCCAAAGTCAGCTGGGAAACATCCTGAGCgaCACTGACAGTTCTTCAGCAGTGAAGGACATGATGAAAGGCCTGGATGACAACCAGGATGGGAAGGTCAGTTTCCAGGAGTACCTGACGCTGGTGGGCTACCTGGCCAACTCACTGAGTGAGCAGAAAGCACAGAGCAGCGCGGCCGGTGGACCATAAGAAGCCCAAAATGCATTGATGACACCGTCAATCATTTGGAATGCTGGAGTCTTGAACCAGTAATGAGCGACTGAGGCTAGTTGTCACAATTCTTTCTACTTATTAAAAAGTGGCTTGCTTTTATTAATGTCAAACCGTTATTTTGGCCAAAACACGCTGTATTAACAAATAGGGTAAAATGATCCTAGATTTGCATACATAACAAAACACAACTCCTTAGCGCTTGCGACTTTCTTTTGCGACAGCTAGCCTTGGGTCTCCAGtggaatataaaatatgcagtgATCTCAAAAAACCATTCAAGTCTctaatataacaaattataaatctgtttacatttatgaatttataaaacaatgTCTGACCTGTGGCCATGTGCAAGTGCTAAATCAAGTCATTTTTGTTGCATGAGCgtttgcttttcatttctcAGCTCCTGTGTTTTCATATATGATTTGATCGTTTTACAGGGAACAAAATATGCTTGATTAGTGTTTAAAACAAGGCATGACTGATGAATGAAAGCCATCAAATATACTAAAAACAGAGTCAATGTCACATcagatttgtgcattttaaaaaaacaaagtgaaaTGATCAcaactggaaaatgtttttgtatgacctttcaattaaaatatggaaataatGACCAAAATTTGTAAACGTTTAA
>TU166911
TGAtttgatggggaaaaaaagcaacttGGGAAGATTGGAATTCGCAGAAGAGGCATTTTTATAGGCATTGTACTGTCTTTAGTTAGAAGAGGCGAGAATCGGCAGAAGAAAATTACAAATATGGAGGGTGCCATTAAAACAGTTGTCATGCAGTTCCTGTCTTCTGCACGGGAAAAGAGAACCTGGGTGGAAAGAACTTCCAAAAGTTAGTCCAAAGTCAGCTGGGAAACATCCTGAGCgaCACTGACAGTTCTTCAGCAGTGAAGGACATGATGAAAGGCCTGGATGACAACCAGGATGGGAAGGTCAGTTTCCAGGAGTACCTGACGCTGGTGGGCTACCTGGCCAACTCACTGAGTGAGCAGAAAGCACAGAGCAGCGCGGCCGGTGGACCATAAGAAGCCCAAAATGCATTGATGACACCGTCAATCATTTGGAATGCTGGAGTCTTGAACCAGTAATGAGCGACTGAGGCTAGTTGTCACAATTCTTTCTACTTATTAAAAAGTGGCTTGCTTTTATTAATGTCAAACCGTTATTTTGGCCAAAACACGCTGTATTAACAAATAGGGTAAAATGATCCTAGATTTGCATACATAACAAAACACAACTCCTTAGCGCTTGCGACTTTCTTTTGCGACAGCTAGCCTTGGGTCTCCAGtggaatataaaatatgcagtgATCTCAAAAAACCATTCAAGTCTctaatataacaaattataaatctgtttacatttatgaatttataaaacaatgTCTGACCTGTGGCCATGTGCAAGTGCTAAATCAAGTCATTTTTGTTGCATGAGCgtttgcttttcatttctcAGCTCCTGTGTTTTCATATATGATTTGATCGTTTTACAGGGAACAAAATATGCTTGATTAGTGTTTAAAACAAGGCATGACTGATGAATGAAAGCCATCAAATATACTAAAAACAGAGTCAATGTCACATcagatttgtgcattttaaaaaaacaaagtgaaaTGATCAcaactggaaaatgtttttgtatgacctttcaattaaaatatggaaataatGACCAAAATTTGTAAACGTTTAA
>XM_043261773.1
CAAATATGGAGGGTGCCATTAAAACAGTTGTCATGCAGTTCCTGTCTTCTGCGGGAAAAGAGAACCTGGGTGGAAAGAACTTCCAAAAGTTAGTCCAAAGTCAGCTGGGAAACATCCTGAGCgaCACTGACAGTTCTTCAGCAGTGAAGGACATGATGAAAGGCCTGGATGACAACCAGGATGGGAAGGTCAGTTTCCAGGAGTACCTGACGCTGGTGGGCTACCTGGCCAACTCACTGAGTGAGCAGAAAGCACAGAGCAGCGCGGCCGGTGGACCATAAGAAGCCCAAAATGCATTGATGACACCGTCAATCATTTGGAATGCTGGAGTCTTGAACCAGTAATGAGCGACTGAGGCTAGTTGTCACAATTCTTTCTACTTATTAAAAAGTGGCTTGCTTTTATTAATGTCAAACCGTTATTTTGGCCAAAACACGCTGTATTAACAAATAGGGTAAAATGATCCTAGATTTGCATACATAACAAAACACAACTCCTTAGCGCTTGCGACTTTCTTTTGCGACAGCTAGCCTTGGGTCTCCAGtggaatataaaatatgcagtgATCTCAAAAAACCATTCAAGTCTctaatataacaaattataaatctgtttacatttatgaatttataaaacaatgTCTGACCTGTGGCCATGTGCAAGTGCTAAATCAAGTCATTTTTGTTGCATGAGCgtttgcttttcatttctcAGCTCCTGTGTTTTCATATATGATTTGATCGTTTTACAGGGAACAAAATATGCTTGATTAGTGTTTAAAACAAGGCATGACTGATGAATGAAAGCCATCAAATATACTAAAAACAGAGTCAATGTCACATcagatttgtgcattttaaaaaaacaaagtgaaaTGATCAcaactggaaaatgtttttgtatgacctttcaattaaaatatggaaataatGACCAAAA

Function

symbol description
si:ch211-105c13.3 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: protein S100-A16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166910 True 1075 lncRNA 0.39 3 14899182 14904907
TU166911 False 1071 lncRNA 0.39 3 14899182 14904907
XM_043261773.1 False 939 mRNA 0.39 3 14899197 14900547

Neighbor

gene id symbol gene type direction distance location
s100t LOC107714712,LOC107594934,LOC107673706,LOC107677025,LOC107582066,LOC107723416 coding downstream 135 14896221 ~ 14899047 (-)
LOC122360979 LOC107673736,LOC107714679,LOC107723515,LOC107677031,LOC107582064,LOC107596123,LOC561423 coding downstream 152557 14727085 ~ 14746625 (-)
LOC122360089 NA coding downstream 179602 14717064 ~ 14719580 (-)
tuft1a LOC107582063,LOC107723549,LOC107714678,LOC107673742,LOC107594884 coding downstream 184216 14701898 ~ 14714966 (-)
si:dkey-92i15.4 LOC107714676,LOC107673754,LOC107594846,LOC107577098 coding downstream 202094 14687731 ~ 14697088 (-)
pbxip1b LOC107714683,LOC107673634 coding upstream 9041 14913948 ~ 14924517 (-)
LOC122361105 LOC107582131 coding upstream 21385 14926292 ~ 14926896 (-)
shc1 shc1,LOC107714692,LOC107677023,LOC107723450 coding upstream 22130 14927037 ~ 14957235 (-)
si:dkey-247k7.2 NA coding upstream 242117 15147024 ~ 15150068 (-)
trim46a trim46,trim46a,LOC107714687,LOC107723477,LOC107582073,LOC107595016 coding upstream 246837 15151744 ~ 15163625 (-)
G113034 NA non-coding downstream 6787 14892040 ~ 14892395 (-)
G112686 NA non-coding downstream 183691 14715216 ~ 14715491 (-)
G112659 NA non-coding downstream 245032 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding downstream 260850 14633214 ~ 14638332 (-)
G112612 NA non-coding downstream 570979 14327952 ~ 14328203 (-)
G113039 NA non-coding upstream 41688 14946595 ~ 14947384 (-)
G113073 NA non-coding upstream 205926 15110833 ~ 15197354 (-)
G113090 NA non-coding upstream 260090 15164997 ~ 15165440 (-)
G113092 s100a10b,LOC107714718,LOC107595024,LOC105891828 non-coding upstream 263466 15168373 ~ 15170070 (-)
G113125 NA non-coding upstream 402958 15307865 ~ 15308418 (-)
LOC122359961 riiad1 other downstream 311313 14582479 ~ 14587869 (-)
dicp3.3 NA other downstream 396046 14498263 ~ 14503136 (-)
G112478 NA other downstream 597563 14234554 ~ 14301619 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 1215273 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 2520733 12363785 ~ 12378449 (-)
LOC122359907 LOC107594909 other upstream 3713 14908620 ~ 14913646 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other upstream 65634 14970541 ~ 15015462 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other upstream 396967 15301874 ~ 15306611 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other upstream 460281 15365188 ~ 15375304 (-)
rps19 rps19,LOC107657656,LOC103354132,LOC100689943 other upstream 563573 15468480 ~ 15496413 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G141481 NA unknown CI01000027 null 4372247 ~ 4412810 (-)
eurasian perch (Perca fluviatilis) G119332 NA non-coding NC_053122.1 CM020919.1 31849440 ~ 31915601 (+)