si:dkey-246i14.3 (si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281)


Basic Information

Item Value
gene id si:dkey-246i14.3
gene name si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14970541 ~ 15015462 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU166926
ATGACCTCTGTCAGACCACATCTTGTGTTTTCTGGCTTCTGTAAGGAGTTTACGCCCCAGGTATTGAGGTAATTTCTAAACTAGGTCATAGACGTTGGGTCAGATACCTAGTTTACTCTCTAACTTTGTCTGTTTCTCCCTCTGCTCTCCATCTGTTTTTCTCccttgctctttctctctctctctctggtctggAGTCTTTCATTAGCCTTTTTCCGTCGTCTCTCTGTCCACCCACTTAACTCTGGATAACCCCCCTCCTCATTCTTCTGCCCGTGTGCGCTCCCTTCCTCCCTTCTTTCCTTCTCAGACTTCCTCTGCCTCCTTCGCTCTGTCGCTTCTTCACAAAAGACTCCCGGTGACAGACCTGGACCGGCCGCCTCGCTCTCACATCCTGTCTTTTCTCCTCCGTGGCCTCCTCTCATCCCTCGCTCGCGTTGCTTCTCTGGAGCACACGTTAACAGGAGATGATTACTCTGTCCAGGTCAATCTGAGTGATTATCTGGATATACTGTGTCCACACTATCCTGCCGACCACCCGTCGAGCGGCCCTGTGGAGACTCTGGCTCTCTACCTGGTGGCTGAGGGCCAGTTCAGGGGCTGCGTGGAGACTAAAGAGGCCATTAAGAGATGGGAGTGCAACCAGCCGTTCGCTCCCTATGGCCCTGTCAGATTCTCTGAAAAGATCCAGCGCTTCACACCCTTCTCCCTGGGCTTTGAGTTCCTGCCCGGACACCATTACTACTATAGCTCGCTGTCCACAGACGACGCACCCCCCCTCCCGTGTATGAAACTACGAGTCACTGTGTGTTGTCCGCCGACAACAGCTGAATCATCAAGACAAGAAGcCACAGAGAGACCGTCACACAGCAGCAGTGTCCACCAGAAGACAGTCGGACGTCTTTCTctcctcctcatcttcctcttattgctttattttctctaaTATGTCGTCTTAAAAATTCAAGTGCTCTGTTGTGGCAGATATTCCTCCATAACCAGTAGCGTTACAGTAAATGCTTGTTCTACTTCTGtggattacacacacacacactctctctctctctctctctctctctctctctctctctttctcgtacTCCTTTGCTCTGTCATTTTTGTCACGCTAGTAATCTCCATCCCTTCACTTTCTTCCtggcagtctctctctctctctctccgtccaCTCTCAGTGGCTTCTTACTCCTGTCTGCTCTGATAAAAGTTCACTCTGTAACAGAGCGACACTAATCTACCTTCAAAGAGCTTATCTTactgttcattttcttttaatccaTCTGTCCTTAAGAGTCAGACATTCCTTTACAAGCCCCCGCTCCCCTCTGTCCTACTGTACAACAAACTGAGCCAAAGACGAGGAGGATGAAGCTCCTGCTGTTTGTACTACTGACTGGAAGATCATTCACTAACATATCCAATGATCAAcaactttttgtctttttttttttttgtcatcgaAAAAAGGAATACATTGAAACCAAAGCCAGACCGCAGCATTTAaagcatcttttttatttttatttttttgctgtattgaCCTAAGTATCCTGGCAGAACTCTGCAATTATCTGGAAGATCCTGGAATTTTTTATCTtgaatttctttcaaatttaTGTGGAAAGTGTGTGACTGAGTGCCGCCTGCCTGGAGcacacaggaagaggaagaactACTTCCTGTTCATCACTTGTGGGGCATGATTGCTCATATCCCGGTATATTGCGTTTGTGTTTAATAAGGCACTTAATCAGGTTCATACAATATCatcagttgtttgttttttaacattatttgggTATGTGAATTATATGTAACGAAAGTGTTCGTTTTGTTTAACTTGATGAGggaatatgcaaaatatttttgataaacataagcaatttttgtttcattttgttttacagtgtattttttagatataataatgcattgatTAAGGAGAAAACAACATCCTTAGTGTTGTTTAATACCTTTAaccatttgtttaatttttaaatgaggatttatttgagatattttatttactgtaaattcgAACATggaaaattcatattttcaggaaaaggaaaaaagaaaatatttgacgCTTATATCTAATATAGACATAAgcataatttgtttgttttctcacatAATTATTAATACCCTTATTGGTATGCAAGGGAATCAAACTAGCACAAAATAATAGAAGctgaaaatatttctatttaatttttgttgtattgtttttgtttttttatttgtttgtttttttatcagttctAATAATGGTGAAGTCATTTTGTCCCCTTCGTACGTTTTAGAATGTTAATACATATTCTGTGGTAAAGATAAATGTTTCGTTTCTCTAGTTTCTGgataatttcatattttcagatGCAAATCATGTCTGCCAAAACAGAACAATCAGTTTACAGACTTGTTAAATCTAGTTTTTAGCATGTAGGAATGTCATTTTCTTTGTCATTCGAgtctttcacatttttgtgaaGTGATCAGGATCTTCTGTGAAGAACG
>XM_043261164.1
TCAAAGTTTTAACGACACGCCCCGTGTCCTCCGCCCTGCCCAGAAACGCACTCCAGTCACTCCTAATCACTGTCAACATCAACGGCCGTGATTGAGAGCGTCCTGCGACTACAAACAATTGTCTTCTTTtcctttcataaaaaaaaaaaactttggagTTGTTGTCAAACTTGGACCCTGTAAACCAAAATCTGGATTtacatttgaagaaaaacaagttACTTTCATGCCAGGGTAAAGTGGAATACTTCTCAGATCTTCACAGGGAAATACTAAACGTCGCAAGGAATCgcaataatgtttttatgaactTGTCTCACACGTCAGCATGTTTCGCATCTTCGTAAACTTAAGCATGTAACCtctcatttcattttagtaCGCAGAACATGCCTCTGTTCCTTAGTACACGCGTTTAGATTTCCTAAAGAATCGGGATTTGCGTTTCTCTACTAATCCAGTAAACTTCTGCAAGCGATTTTGACTCAAAATTGAGTCTCATTTCAGTTAAACCTCAGTGTAAACTTGTATCAGCCGCCCACAAGAGCTGGTCGACTTCAGTCATGAATGTGCCAAGGTGCTCTGGAGTCTGCGCTACGATGAGACTTCTGGCTCTGTTTGTACACGTTATGTCAACGACGGCAAAGAGACACGTTGTATACTGGAACTCTACAAACACACGGTTAACAGGAGATGATTACTCTGTCCAGGTCAATCTGAGTGATTATCTGGATATACTGTGTCCACACTATCCTGCCGACCACCCGTCGAGCGGCCCTGTGGAGACTCTGGCTCTCTACCTGGTGGCTGAGGGCCAGTTCAGGGGCTGCGTGGAGACTAAAGAGGCCATTAAGAGATGGGAGTGCAACCAGCCGTTCGCTCCCTATGGCCCTGTCAGATTCTCTGAAAAGATCCAGCGCTTCACACCCTTCTCCCTGGGCTTTGAGTTCCTGCCCGGACACCATTACTACTATAGCTCGCTGTCCACAGACGACGCACCCCCCCTCCCGTGTATGAAACTACGAGTCACTGTGTGTTGTCCGCCGACAACAGCTGAATCATCAAGACAAGAAGcCACAGAGAGACCGTCACACAGCAGCAGTGTCCACCAGAAGACAGTCGGACGTCTTTCTctcctcctcatcttcctcttattgctttattttctctaaTATGTCGTCTTAAAAATTCAAGTGCTCTGTTGTGGCAGATATTCCTCCATAACCAGTAGCGTTACAGTAAATGCTTGTTCTACTTCTGtggattacacacacacacactctctctctctctctctctctctctctctctctctctttctcgtacTCCTTTGCTCTGTCATTTTTGTCACGCTAGTAATCTCCATCCCTTCACTTTCTTCCtggcagtctctctctctctctctccgtccaCTCTCAGTGGCTTCTTACTCCTGTCTGCTCTGATAAAAGTTCACTCTGTAACAGAGCGACACTAATCTACCTTCAAAGAGCTTATCTTactgttcattttcttttaatccaTCTGTCCTTAAGAGTCAGACATTCCTTTACAAGCCCCCGCTCCCCTCTGTCCTACTGTACAACAAACTGAGCCAAAGACGAGGAGGATGAAGCTCCTGCTGTTTGTACTACTGACTGGAAGATCATTCACTAACATATCCAATGATCAAcaactttttgtctttttttttttttgtcatcgaAAAAAGGAATACATTGAAACCAAAGCCAGACCGCAGCATTTAaagcatcttttttatttttatttttttgctgtattgaCCTAAGTATCCTGGCAGAACTCTGCAATTATCTGGAAGATCCTGGAATTTTTTATCTtgaatttctttcaaatttaTGTGGAAAGTGTGTGACTGAGTGCCGCCTGCCTGGAGcacacaggaagaggaagaactACTTCCTGTTCATCACTTGTGGGGCATGATTGCTCATATCCCGGTATATTGCGTTTGTGTTTAATAAGGCACTTAATCAGGTTCATACAATATCatcagttgtttgttttttaacattatttgggTATGTGAATTATATGTAACGAAAGTGTTCGTTTTGTTTAACTTGATGAGggaatatgcaaaatatttttgataaacataagcaatttttgtttcattttgttttacagtgtattttttagatataataatgcattgatTAAGGAGAAAACAACATCCTTAGTGTTGTTTAATACCTTTAaccatttgtttaatttttaaatgaggatttatttgagatattttatttactgtaaattcgAACATggaaaattcatattttcaggaaaaggaaaaaagaaaatatttgacgCTTATATCTAATATAGACATAAgcataatttgtttgttttctcacatAATTATTAATACCCTTATTGGTATGCAAGGGAATCAAACTAGCACAAAATAATAGAAGctgaaaatatttctatttaatttttgttgtattgtttttgtttttttatttgtttgtttttttatcagttctAATAATGGTGAAGTCATTTTGTCCCCTTCGTACGTTTTAGAATGTTAATACATATTCTGTGGTAAAGATAAATGTTTCGTTTCTCTAGTTTCTGgataatttcatattttcagatGCAAATCATGTCTGCCAAAACAGAACAATCAGTTTACAGACTTGTTAAATCTAGTTTTTAGCATGTAGGAATGTCATTTTCTTTGTCATTCGAgtctttcacatttttgtgaaGTGATCAGGATCTTCTGTGAAGAACGTTCATCTTAGCCATTTTTCCACGGCAAAATgagctacaaaaataaaagataatgcTTTTCAGTC

Function

symbol description
efna4 Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance and ephrin receptor signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Orthologous to human EFNA4 (ephrin A4).

NR:

description
ephrin-A4-like

GO: NA

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
TU166926 False 2538 lncRNA 0.41 5 14970605 14988931
XM_043261164.1 True 2828 mRNA 0.39 5 14970541 15015462

Neighbor

gene id symbol gene type direction distance location
shc1 shc1,LOC107714692,LOC107677023,LOC107723450 coding downstream 13306 14927037 ~ 14957235 (-)
LOC122361105 LOC107582131 coding downstream 43645 14926292 ~ 14926896 (-)
pbxip1b LOC107714683,LOC107673634 coding downstream 46024 14913948 ~ 14924517 (-)
s100t LOC107714712,LOC107594934,LOC107673706,LOC107677025,LOC107582066,LOC107723416 coding downstream 71494 14896221 ~ 14899047 (-)
LOC122360979 LOC107673736,LOC107714679,LOC107723515,LOC107677031,LOC107582064,LOC107596123,LOC561423 coding downstream 223916 14727085 ~ 14746625 (-)
si:dkey-247k7.2 NA coding upstream 131562 15147024 ~ 15150068 (-)
trim46a trim46,trim46a,LOC107714687,LOC107723477,LOC107582073,LOC107595016 coding upstream 136282 15151744 ~ 15163625 (-)
osgin2 osgin2,LOC107723494,LOC107596464,LOC107714693,LOC107582167,LOC107699543 coding upstream 317196 15332658 ~ 15340225 (-)
LOC122360842 NA coding upstream 326869 15342331 ~ 15342771 (-)
LOC122360653 LOC107596174,LOC107714661 coding upstream 340172 15355634 ~ 15362140 (-)
G113039 NA non-coding downstream 23157 14946595 ~ 14947384 (-)
G113034 NA non-coding downstream 78146 14892040 ~ 14892395 (-)
G112686 NA non-coding downstream 255050 14715216 ~ 14715491 (-)
G112659 NA non-coding downstream 316391 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding downstream 332209 14633214 ~ 14638332 (-)
G113073 NA non-coding upstream 95371 15110833 ~ 15197354 (-)
G113090 NA non-coding upstream 149535 15164997 ~ 15165440 (-)
G113092 s100a10b,LOC107714718,LOC107595024,LOC105891828 non-coding upstream 152911 15168373 ~ 15170070 (-)
G113125 NA non-coding upstream 292403 15307865 ~ 15308418 (-)
G113136 NA non-coding upstream 310097 15325559 ~ 15428662 (-)
LOC122359907 LOC107594909 other downstream 56895 14908620 ~ 14913646 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other downstream 65634 14899182 ~ 14904907 (-)
LOC122359961 riiad1 other downstream 382672 14582479 ~ 14587869 (-)
dicp3.3 NA other downstream 467405 14498263 ~ 14503136 (-)
G112478 NA other downstream 668922 14234554 ~ 14301619 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other upstream 286412 15301874 ~ 15306611 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other upstream 349726 15365188 ~ 15375304 (-)
rps19 rps19,LOC107657656,LOC103354132,LOC100689943 other upstream 453018 15468480 ~ 15496413 (-)
fxyd6l si:dkey-56f14.4,fxyd6l,LOC107570838,LOC107657592,LOC107723383,LOC107570836,LOC107714713,LOC107699456,LOC107657664,LOC107723441 other upstream 644290 15659752 ~ 15672151 (-)
G113203 fpr1,LOC107714672,LOC107699476,LOC107593626,LOC107657616,LOC107595349,LOC107723415,LOC108429924,LOC108265369 other upstream 801517 15816979 ~ 15819086 (-)

Expression


Co-expression Network