rps19 (rps19,LOC107657656,LOC103354132,LOC100689943)


Basic Information

Item Value
gene id rps19
gene name rps19,LOC107657656,LOC103354132,LOC100689943
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15468480 ~ 15496413 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU167048
AACCCTGCACGTCCCTCTTCCTTTTGCTGTCCACAAGCAAGATGCCAGGCGGTGGTGTAACAGTGAAAGACGTCAACCAGCAGGAGTTTGTCCGAGCGCTGGCAGCCTTCCTCAAGAAGTCGGGGAAGCTGAAGGTGCCAGACTGGGTTGATATTGTTAAGCTGGCCAAGCATAAAGAGCTGGCTCCCTGCGACGAAAACTGGTTCTACGTCAGAGCTGCCTCCACAGTGCGTCACCTGTACCTGCGTGGAGGTGTTGGCGTGCTCTATGACCAAGATCTACGGCGGGCGTAAGAGGAACGTGTATGCCCCTCTCACTTCAGTGTGGGCTCCAAGAACGTTGCCCGTAAAGTGCTCCAGGCCCTCGAGGGACTTAAGATGGTGGAGAAAGACCCCAATGGTGGGCGTAGACTGACCCCTCAGGGCACCAGAGACCTGGACAGAATTGCTGGGCAGGTTGCTGCTGCAAGCAAGAAATCTTGAAgtgtaaaataaacttttgtgaGAAACCAACaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaag
>TU167049
AACCCTGCACGTCCCTCTTCCTTTTGCTGTCCACAAGCAAGATGCCAGGCGGTGGTGTAACAGTGAAAGACGTCAACCAGCAGGAGTTTGTCCGAGCGCTGGCAGCCTTCCTCAAGAAGTCGGGGAAGCTGAAGGTGCCAGACTGGGTTGATATTGTTAAGCTGGCCAAGCATAAAGAGCTGGCTCCCTGCGACGAAAACTGGTTCTACGTCAGAGCTGCCTCCACAGTGCGTCACCTGTACCTGCGTGGAGGTGTTGGCGTGCTCTATGACCAAGATCTACGGCGGGCGTAAGAGGAACGTGTATGCCCCTCTCACTTCAGTGTGGGCTCCAAGAACGTTGCCCGTAAAGTGCTCCAGGCCCTCGAGGGACTTAAGATGGTGGAGAAAGACCCCAATGGTGGGCGTAGACTGACCCCTCAGGGCACCAGAGACCTGGACAGAATTGCTGGGCAGGTTGCTGCTGCAAGCAAGAAATCTTGAAgtgtaaaataaacttttgtgaGAAACCAACCACTGCGTCTTGgtcttatttaatgtttttgtgtttgtgtgtgacttTCCTTCAGggacaaaaatctaaaaatgaaacGCTTTAATGTTCCTAAAGCTCTAGTGGCTTAATGGTCTGTTAATGTTC
>TU167050
AACCCTGCACGTCCCTCTTCCTTTTGCTGTCCACAAGCAAGATGCCAGGCGGTGGTGTAACAGTGAAAGACGTCAACCAGCAGGAGTTTGTCCGAGCGCTGGCAGCCTTCCTCAAGAAGTCGGGGAAGCTGAAGGTGCCAGACTGGGTTGATATTGTTAAGCTGGCCAAGCATAAAGAGCTGGCTCCCTGCGACGAAAACTGGTTCTACGTCAGAGCTGCCTCCACAGTGCGTCACCTGTACCTGCGTGGAGGTGTTGGCGTGCTCTATGACCAAGATCTACGGCGGGCGTAAGAGGAACGTGTATGCCCCTCTCACTTCAGTGTGGGCTCCAAGAACGTTGCCCGTAAAGTGCTCCAGGCCCTCGAGGGACTTAAGATGGTGGAGAAAGACCCCAATGGTGGGCGTAGACTGACCCCTCAGGGCACCAGAGACCTGGACAGAATTGCTGGGCAGGTTGCTGCTGCAAGCAAGAAATCTTGAAgtgtaaaataaacttttgtgaGAAACCAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaag
>TU167051
aaaaaataatggttttcaGATGCCAGGCGGTGGTGTAACAGTGAAAGACGTCAACCAGCAGGAGTTTGTCCGAGCGCTGGCAGCCTTCCTCAAGAAGTCGGGGAAGCTGAAGGTGCCAGACTGGGTTGATATTGTTAAGCTGGCCAAGCATAAAGAGCTGGCTCCCTGCGACGAAAACTGGTTCTACGTCAGAGCTGCCTCCACAGTGCGTCACCTGTACCTGCGTGGAGGTGTTGGCGTGCTCTATGACCAAGATCTACGGCGGGCGTAAGAGGAACGTGTATGCCCCTCTCACTTCAGTGTGGGCTCCAAGAACGTTGCCCGTAAAGTGCTCCAGGCCCTCGAGGGACTTAAGATGGTGGAGAAAGACCCCAATGGTGGGCGTAGACTGACCCCTCAGGGCACCAGAGACCTGGACAGAATTGCTGGGCAGGTTGCTGCTGCAAGCAAGAAATCTTGAAgtgtaaaataaacttttgtgaGAAACCAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaag
>XM_043260093.1
ATAACAAGTGCGAGACTCCCCTGTTAACACGCATAGGAAACCCTGCACGTCCCTCTTCCTTTTGCTGTCCACAAGCAAGATGCCAGGCGGTGGTGTAACAGTGAAAGACGTCAACCAGCAGGAGTTTGTCCGAGCGCTGGCAGCCTTCCTCAAGAAGTCGGGGAAGCTGAAGGTGCCAGACTGGGTTGATATTGTTAAGCTGGCCAAGCATAAAGAGCTGGCTCCCTGCGACGAAAACTGGTTCTACGTCAGAGCTGCCTCCACAGTGCGTCACCTGTACCTGCGTGGAGGTGTTGGCGTCTCTATGACCAAGATCTACGGCGGGCGTAAGAGGAGTGTATGCCCCTCTCACTTCAGTGTGGGCTCCAAGAACGTTGCCCGTAAAGTGCTCCAGGCCCTCGAGGGACTTAAGATGGTGGAGAAAGACCCCAATGGTGGGCGTAGACTGACCCCTCAGGGCACCAGAGACCTGGACAGAATTGCTGGGCAGGTTGCTGCTGCAAGCAAGAAATCTTGAAgtgtaaaataaacttttgtgaGAAACCAA

Function

symbol description
rps19 Contributes as a structural constituent of ribosome. Acts upstream of or within several processes, including brain segmentation; erythrocyte development; and hemoglobin biosynthetic process. Located in ribosome. Used to study Diamond-Blackfan anemia and aplastic anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia and Diamond-Blackfan anemia 1. Orthologous to human RPS19 (ribosomal protein S19).

NR:

description
40S ribosomal protein S19

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0035284 brain segmentation biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0045646 regulation of erythrocyte differentiation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167048 False 557 TUCP 0.50 8 15468480 15496375
TU167049 True 639 TUCP 0.51 6 15492821 15496375
TU167050 False 554 TUCP 0.50 8 15468480 15496375
TU167051 False 533 TUCP 0.49 7 15468480 15495722
XM_043260093.1 False 547 mRNA 0.54 8 15492948 15496413

Neighbor

gene id symbol gene type direction distance location
LOC122360653 LOC107596174,LOC107714661 coding downstream 106340 15355634 ~ 15362140 (-)
LOC122360842 NA coding downstream 125709 15342331 ~ 15342771 (-)
osgin2 osgin2,LOC107723494,LOC107596464,LOC107714693,LOC107582167,LOC107699543 coding downstream 128255 15332658 ~ 15340225 (-)
trim46a trim46,trim46a,LOC107714687,LOC107723477,LOC107582073,LOC107595016 coding downstream 304855 15151744 ~ 15163625 (-)
si:dkey-247k7.2 NA coding downstream 318412 15147024 ~ 15150068 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529,LOC107582091,LOC107723444 coding upstream 9646 15506059 ~ 15627109 (-)
si:ch211-79k12.1 LOC107699527,LOC107714699,LOC107723562,LOC107595219,LOC107657658,LOC107582092 coding upstream 134128 15630541 ~ 15639888 (-)
si:ch211-79k12.2 LOC107714696,LOC107699526,LOC107595229,LOC107657659,LOC107723573 coding upstream 144761 15641174 ~ 15646291 (-)
LOC122360742 LOC107723437,LOC107570834,LOC107657661,LOC107595282,LOC107714733 coding upstream 192084 15688497 ~ 15693259 (-)
LOC122360744 LOC107595282,LOC107714733,LOC107699523,LOC107699524,LOC107714734,LOC107595292 coding upstream 197351 15693764 ~ 15696605 (-)
G113136 NA non-coding downstream 39818 15325559 ~ 15428662 (-)
G113151 NA non-coding downstream 48053 15418906 ~ 15420427 (-)
G113139 NA non-coding downstream 55637 15407948 ~ 15412843 (-)
G113138 apoeb,LOC107714700,LOC107699536,LOC107723536,LOC107595129,LOC107657653 non-coding downstream 62397 15402327 ~ 15406083 (-)
G113149 LOC107723544,LOC107714703,LOC107657612,LOC107723413,LOC107699537,LOC107596479,LOC107596180,LOC107595112,LOC107596500,LOC107714702 non-coding downstream 70815 15381431 ~ 15397665 (-)
G113179 NA non-coding upstream 209410 15705823 ~ 15706059 (-)
G113168 ywhabl,LOC107595301,LOC107570839,LOC107723438 non-coding upstream 213325 15709738 ~ 15717886 (-)
G113187 NA non-coding upstream 267056 15763469 ~ 15763745 (-)
G113232 NA non-coding upstream 409820 15906233 ~ 15906830 (-)
G113231 LOC107714685,LOC107699511,LOC107657677,LOC107723481 non-coding upstream 410686 15907099 ~ 15908673 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other downstream 93176 15365188 ~ 15375304 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other downstream 161869 15301874 ~ 15306611 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other downstream 453018 14970541 ~ 15015462 (-)
LOC122359907 LOC107594909 other downstream 554834 14908620 ~ 14913646 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other downstream 563573 14899182 ~ 14904907 (-)
fxyd6l si:dkey-56f14.4,fxyd6l,LOC107570838,LOC107657592,LOC107723383,LOC107570836,LOC107714713,LOC107699456,LOC107657664,LOC107723441 other upstream 163339 15659752 ~ 15672151 (-)
G113203 fpr1,LOC107714672,LOC107699476,LOC107593626,LOC107657616,LOC107595349,LOC107723415,LOC108429924,LOC108265369 other upstream 320566 15816979 ~ 15819086 (-)
G113220 LOC107714743,LOC107699517,LOC107595378,LOC107657670,LOC107593630,LOC107723558 other upstream 361186 15857599 ~ 15861893 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other upstream 504900 16001313 ~ 16006471 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other upstream 516551 16012964 ~ 16013751 (-)

Expression


Co-expression Network