G113280 (jarid2a,LOC107593646,LOC107657689,LOC107714830,LOC107699452,LOC107595576)


Basic Information

Item Value
gene id G113280
gene name jarid2a,LOC107593646,LOC107657689,LOC107714830,LOC107699452,LOC107595576
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16194029 ~ 16195896 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU167286
AGTTTGTGGGATAAAAGGGAAAGTGCATTTACAATTGAAATAGCGtatctttaaaaacaagtaCAAACTGCCCTCAGCATCAAACGTGTTATTTGCGCTCcaaagattttttattaaaaggcctcaaaatgtgcttttaaaagaGGGGAGTTCCTAGTGTACTCACACAAGGCCTTGAGATCACGGGCTCCTTGACGTGCATCTCATCTatctcaatttttttattttttgtagctGAAGATCCAAAATGCCAGTAACCTCGATACATGTAATGTTAGACGTGTGGGCTGTACTCTCGCACGTTCCTTCTTGTACCTGACAGCTTTAAGACGTCATAAACGTGAGCCCAAGAGACAAACAGGCCGTAAGGGTGATGGAGAAAAGTGTCACTACAGCACCAGTTAAACACAAATGATAGGAATAGTATaggatatatttatatctatgtaTACGCATATCTATACTCGATTTAATGCTAAAACAACCCGAAAATACTCATCTAAAAACCAATCTCAATACTAGTGCAAAAGGTTTCGTGCTTGTTGGATGAGACCCAATAGCCTTACGTCAGGTGCCCCAAACAATTGTGTATTCGCCCCCTTATATTTGACGTGAAATGCGATGTAACATTTAACCTCCGTACATTCAATATATTGGACTAACCAGCCAGTAACTACACGTATCTGTAATACAAAAGTGCAATATAACAGCTTGttgtattgatatatttatacactAGGTACAAAGAGTATTGAAGAGTGTTTGTACACAAGTATTAGGAACACCTGATATAAAAGGAGACCCGGAGGAATGTCGCTGACGCTCTGGTCTGGTTAGGAGCGGCCGGTGTTCTTTGAGGTGGTGCTGGAGAGAGAGTTTCTGGGGCTTCGTTTTGCTGGTGTCTTGCTGGGGCCGACGGCTCTCTGCTTCACGCCGCCCTTCTCCAGCGCTCTCCCGCACACTCGACTCACCAGACCGTTGATCTGCTCCTGCGCGTAACGAAACATCATCTTGAGGCCTCGGGGGGACCTGCGCTTCTGGATGTATCGCAGAGCGCATTCCAGACAGAAAACCACATTGTCACTCTCATGAACCATGGAGAGGTAACACAGATGCTGACACACTTGGCAGCGTCTGTCAGCCGTGTCTTCTGTAAATCTCAAGCGCTGCTGCTTCTTC

Function

symbol description
jarid2a Predicted to enable histone demethylase activity. Predicted to be involved in chromatin remodeling. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2).

NR:

description
PREDICTED: protein Jumonji-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167286 True 1179 lncRNA 0.44 3 16194029 16195896

Neighbor

gene id symbol gene type direction distance location
LOC122361096 zgc:136493,LOC107699466,LOC107714862,LOC107596560 coding downstream 39641 16152504 ~ 16154388 (-)
LOC122361095 LOC107596551,LOC107699467,LOC107715090,LOC107657620,LOC107578647 coding downstream 41950 16148963 ~ 16152079 (-)
LOC122360718 jarid2a,LOC107714830,LOC107595576,LOC107699452,LOC107593646,LOC107657689,LOC107723487 coding downstream 90374 16070539 ~ 16103655 (-)
rbfa LOC107699468,LOC107715083,LOC107596252 coding downstream 193381 15998312 ~ 16000648 (-)
prelid3a prelid3a,LOC107715058,LOC107723525 coding downstream 230321 15959669 ~ 15963708 (-)
dtnbp1a LOC107723533,LOC107657692,LOC107714847,LOC107593648 coding upstream 1823 16197719 ~ 16210633 (-)
zgc:110410 zgc:110410,LOC107723576,LOC107657623,LOC107593651 coding upstream 44058 16239954 ~ 16243472 (-)
derl1 derl1,LOC107593655,LOC107657695,LOC107714924,LOC107736822,LOC107699495,LOC107595682 coding upstream 60586 16256482 ~ 16264542 (-)
tomm40 LOC107723430,LOC107593658,LOC107657699,LOC107699493,LOC108438269,LOC107714943 coding upstream 71142 16267038 ~ 16272470 (-)
ddx61 ddx61,LOC107699492,LOC107714973,LOC107657698,LOC107593657,LOC107595651,LOC107723428,LOC108428944,LOC103044136 coding upstream 77384 16273280 ~ 16280228 (-)
G113300 NA non-coding downstream 1340 16190862 ~ 16192689 (-)
LOC122361072 LOC107723533,LOC107657692 non-coding downstream 126484 16066166 ~ 16067545 (-)
LOC122360541 NA non-coding downstream 207845 15984741 ~ 15986184 (-)
G113244 LOC107715075,LOC107699469,LOC107595516,LOC107723556,LOC107593640,LOC107657683 non-coding downstream 226836 15964758 ~ 15967193 (-)
G113234 NA non-coding downstream 235365 15929222 ~ 15958664 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding upstream 156374 16352270 ~ 16357623 (-)
LOC122360769 NA non-coding upstream 292222 16488118 ~ 16494739 (-)
G113405 NA non-coding upstream 356712 16552608 ~ 16553858 (-)
G113433 NA non-coding upstream 392789 16588685 ~ 16589614 (-)
G113439 epb41l4b,LOC107706320,LOC107687806,LOC107596310 non-coding upstream 410818 16606714 ~ 16607680 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 52794 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 180278 16012964 ~ 16013751 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other downstream 187558 16001313 ~ 16006471 (-)
G113220 LOC107714743,LOC107699517,LOC107595378,LOC107657670,LOC107593630,LOC107723558 other downstream 332136 15857599 ~ 15861893 (-)
G113203 fpr1,LOC107714672,LOC107699476,LOC107593626,LOC107657616,LOC107595349,LOC107723415,LOC108429924,LOC108265369 other downstream 374943 15816979 ~ 15819086 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other upstream 22765 16218661 ~ 16228466 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other upstream 37076 16232972 ~ 16239506 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other upstream 390188 16586084 ~ 16682178 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1616474 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1999575 18195471 ~ 18239269 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G140869 NA non-coding CI01000027 null 5906796 ~ 5911149 (+)