G113439 (epb41l4b,LOC107706320,LOC107687806,LOC107596310)


Basic Information

Item Value
gene id G113439
gene name epb41l4b,LOC107706320,LOC107687806,LOC107596310
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16606714 ~ 16607680 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU167532
CTGTAGGGTCAGATGCGGGGCAGACACAGAGATTAAGCATGTCAGAAATGCATTAGGTTGATTATTGAAAGGAGATATGGCATACGGCACGCAGACCTACCTTTGACCATAGACTGGGCTCGTGATGGATATCTTTTACTCGGTCTTCTCTCAAAAGTGCTTGCTCTCCTGACTTTACCACTATGTGTTGCCTGGTATTCAGTCCTTCCACTGTAAACACAATCAACATGACACTTAAAAAAGGTGACAGTGTAAATATGTTGGCAGATTAGGTGTACGTATGTATGTACCTGAATCTGAACCGTGAGCCGAGGCGTGTGAAGTCACTGcggtttctgttgttgtgggtTGGCTGTCTGAGCCGGAAGAAGGCATGGCTCTCGACTGCACACTTCCATAAGTGCTTACACTCCCGAGAACTTGAAAGCTGAAACACAAACGTGTGCTCCTGCTCTCGTCCCTGCACCCACAAAACATCATCCTCCACAACCACTAATGTCAGTCGGTTCTTCCTGAAGTCAAGGCGAGTTATCTTAG

Function

symbol description
epb41l4b Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human EPB41L4B (erythrocyte membrane protein band 4.1 like 4B).

NR:

description
PREDICTED: band 4.1-like protein 4B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167532 True 537 lncRNA 0.47 2 16606714 16607680

Neighbor

gene id symbol gene type direction distance location
sgk2b sgk2b,LOC107687822,LOC107595908,LOC107706345 coding downstream 31278 16571366 ~ 16575436 (-)
l3mbtl1b LOC107687798,LOC107706333,LOC107723564,LOC107657713,LOC107593673 coding downstream 36276 16561699 ~ 16570438 (-)
LOC122360041 LOC107687802,LOC107595942,LOC107706353 coding downstream 46680 16557546 ~ 16560034 (-)
megf8 megf8,LOC107595817,LOC107687796,LOC107593670,LOC107657710 coding downstream 67101 16514357 ~ 16539613 (-)
LOC122359884 LOC107706374,LOC107687795,LOC107595808,LOC107723391 coding downstream 92743 16508483 ~ 16513971 (-)
rnf41l rnf41l,LOC107687809,LOC107723454,LOC107593678,LOC108443277 coding upstream 38866 16646546 ~ 16650313 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107687812,LOC107593682,LOC107723551 coding upstream 80535 16688215 ~ 16693128 (-)
ino80c ino80c,LOC107706244,LOC107723410,LOC107657632,LOC107596621,LOC107593731 coding upstream 89641 16697321 ~ 16698849 (-)
tmem245 LOC107687814,LOC107595951,LOC107706205,LOC107723436,LOC107657721,LOC107593683 coding upstream 176340 16784020 ~ 16799200 (-)
LOC122360322 frrs1l,LOC107595962,LOC107657722,LOC107723406,LOC107593684 coding upstream 191680 16799360 ~ 16804107 (-)
G113433 NA non-coding downstream 17100 16588685 ~ 16589614 (-)
G113405 NA non-coding downstream 52856 16552608 ~ 16553858 (-)
LOC122360769 NA non-coding downstream 111975 16488118 ~ 16494739 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding downstream 249091 16352270 ~ 16357623 (-)
G113280 jarid2a,LOC107593646,LOC107657689,LOC107714830,LOC107699452,LOC107595576 non-coding downstream 410818 16194029 ~ 16195896 (-)
G113470 cdh17,LOC107595837,LOC107706528,LOC107687825 non-coding upstream 72004 16679684 ~ 16680112 (-)
G113473 NA non-coding upstream 86250 16693930 ~ 16694290 (-)
LOC122360493 NA non-coding upstream 116738 16724418 ~ 16737282 (-)
G113504 NA non-coding upstream 213950 16821630 ~ 16822180 (-)
G113569 LOC107706170,LOC107657725,LOC107593690,LOC107723503 non-coding upstream 280641 16888321 ~ 16892578 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 367208 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 378248 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 465479 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 592963 16012964 ~ 16013751 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other downstream 600243 16001313 ~ 16006471 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1204690 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1587791 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 1749737 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 1884946 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 2041839 18649519 ~ 18650609 (-)

Expression


Co-expression Network