G113470 (cdh17,LOC107595837,LOC107706528,LOC107687825)


Basic Information

Item Value
gene id G113470
gene name cdh17,LOC107595837,LOC107706528,LOC107687825
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16679684 ~ 16680112 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU167571
CCGAGCGATGTAGACTCTGCCTTCTCCAGTTTCTTCATTAACTTCTATGGCTAAGAGATTATGTGGGTCTCCAGCAGTGATGTGATACTCCACCCTAGAGCTTCCTGTTCCTGGGTCATCTGCATCCGTGGCTTTGATGATGAGCAAAGTGGTTCCCAACTCAGCTAGCTCAGGAACACTGTGGGTCCCATctttTTTCTCGAAGACAGGGATCTCGTTATTGATGTCGATGACCTTGATGATTGCTTTACATTCCGCAGTGTAAACTGCAAACAAGTGCAAAAGGTATggagcacatttaaaaaaaaaaaaaaaaaa

Function

symbol description
cdh17 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within pronephros development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Is expressed in digestive system; intermediate cell mass of mesoderm; mesoderm; and renal system. Orthologous to human CDH17 (cadherin 17).

NR:

description
PREDICTED: cadherin-17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167571 True 318 lncRNA 0.44 2 16679684 16680112

Neighbor

gene id symbol gene type direction distance location
rnf41l rnf41l,LOC107687809,LOC107723454,LOC107593678,LOC108443277 coding downstream 29371 16646546 ~ 16650313 (-)
sgk2b sgk2b,LOC107687822,LOC107595908,LOC107706345 coding downstream 104248 16571366 ~ 16575436 (-)
l3mbtl1b LOC107687798,LOC107706333,LOC107723564,LOC107657713,LOC107593673 coding downstream 109246 16561699 ~ 16570438 (-)
LOC122360041 LOC107687802,LOC107595942,LOC107706353 coding downstream 119650 16557546 ~ 16560034 (-)
megf8 megf8,LOC107595817,LOC107687796,LOC107593670,LOC107657710 coding downstream 140071 16514357 ~ 16539613 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107687812,LOC107593682,LOC107723551 coding upstream 8103 16688215 ~ 16693128 (-)
ino80c ino80c,LOC107706244,LOC107723410,LOC107657632,LOC107596621,LOC107593731 coding upstream 17209 16697321 ~ 16698849 (-)
tmem245 LOC107687814,LOC107595951,LOC107706205,LOC107723436,LOC107657721,LOC107593683 coding upstream 103908 16784020 ~ 16799200 (-)
LOC122360322 frrs1l,LOC107595962,LOC107657722,LOC107723406,LOC107593684 coding upstream 119248 16799360 ~ 16804107 (-)
alg2 alg2,LOC107706186,LOC107595974,LOC107723517,LOC107687815 coding upstream 137614 16817726 ~ 16820755 (-)
G113439 epb41l4b,LOC107706320,LOC107687806,LOC107596310 non-coding downstream 72004 16606714 ~ 16607680 (-)
G113433 NA non-coding downstream 90070 16588685 ~ 16589614 (-)
G113405 NA non-coding downstream 125826 16552608 ~ 16553858 (-)
LOC122360769 NA non-coding downstream 184945 16488118 ~ 16494739 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding downstream 322061 16352270 ~ 16357623 (-)
G113473 NA non-coding upstream 13818 16693930 ~ 16694290 (-)
LOC122360493 NA non-coding upstream 44306 16724418 ~ 16737282 (-)
G113504 NA non-coding upstream 141518 16821630 ~ 16822180 (-)
G113569 LOC107706170,LOC107657725,LOC107593690,LOC107723503 non-coding upstream 208209 16888321 ~ 16892578 (-)
G113567 nr4a3,LOC107687818,LOC107706170,LOC107723503 non-coding upstream 214240 16894352 ~ 16895923 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 440178 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 451218 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 538449 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 665933 16012964 ~ 16013751 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other downstream 673213 16001313 ~ 16006471 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1132258 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1515359 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 1677305 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 1812514 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 1969407 18649519 ~ 18650609 (-)

Expression


Co-expression Network