G113567 (nr4a3,LOC107687818,LOC107706170,LOC107723503)


Basic Information

Item Value
gene id G113567
gene name nr4a3,LOC107687818,LOC107706170,LOC107723503
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16894352 ~ 16895923 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU167704
TCAAACTGCTGCCGTATGATAAAGTAAGCGAGAACGCCCAGTCAGTAAGTGTGTTCAAGCCCTTGTGGAGCCGGCAgtctttgcaaaataaatacaagcagAGGCGAGAAGGAGAAAACCATGCATATAATccgtttttactttttttgtacatataaaagacatttttgcacCAATGTCCTCCATATTAATAAATGGCGTAGACagtataaacatacaaaaatgagCATGAACATGGAATGTTTCATTCCTTCCATCCTCTCTCTGCACCTGCATCTCACCTGCCTTCTCTTAcctcttgtttatttttaagtgctCAAAGCCCAATTCTACTCTTTTTAGTCTGTTACCCTATCACTAAAATCCCTtggtttttattcataataacaataaaaaaaacgacaGTAATTTCAAGTCTGTGGAACTTCGTCGTTAAAAGTTAGTGCGCAGACCGAGCTAAATCATCTCAATTGAAACCGTTACCTTACAAGGCGAGTcttagtattaaaataatttagagtTTGAAATAGGActggaacaaacacacacactctctcgttctctcctccctctctctctctctctctctctctctcttcgttTACAATAGCACTTAGTAAATTGCACTTGTTTGCAGGTTTCTGGGGTGTGATCAACTGTGATTCTGGACATTAATGCACTCTGTCGTTCGGTCTGTGTGGCGAAAGCCTCCCTCAGAGACACTCCTACgtgttttcacacacacatccactTCGTTTCTGCCAAAGACAGTTGATATGTCATAATCTGGCATCTGAAGCTGGCGTTTTGGATCCGTGCGTATGTGTGAAAGGACAGTTCGCGTgcacttgtgtgtttgtgagtgtatGTTTGTGATAAACATAACTGCTGTCATTGAGGTGAATTGTGGTGGAACTTTTGGACCGCCTGCAAAGGAGCCGTTAAGTGTGcgtactcacacacacgcacgcacgcatacacacattcTCGCACGGTAATACTTCTCCTGACGTGGCGCGCTGAGCTATAGGCATGGTGCTCGTTCCCAGGGCGCGCGTCAGATACGCTCAAACCCCGCCTCGTATCTACACTATCAGGCGCAGAGCAGAGATTAAAAGCGCTTATATGATTGGTTTCTCCTCAGACACGTTTGTTTCCTGTGAGGATTTGGGGACTCATGGAAAATCGAGTTCAGTGTCACTGTTAGCTACTGGCTCTATGCCTCACAGGGTGAGTTTTTAGCCGCTGTGGGCGTGTCTGAGTGAGCTTGTGGGCGTGTCCAGAAACCTATCGATGAGCGGCGGGGGTGGGACCAGATCCTCAAGCTTCAGGTAGAAGATCCTCTGTAAGCCTTGCGTACGCTGAGTTCGAAGCTCCGCCCTCAAGCCAAGCACAGCTCCCAGTGGGGGTGGGGCCTTGCCGGTTGAAGCCACGCCTCCTGCACTGACCGAGCTCAGGTGATCTCGCAGGCAGCAGATTAGCTTGGATTGCAGTTCCTCAACTTTTTTAGGCTCCTTCAGACCAGGA

Function

symbol description
nr4a3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Acts upstream of or within neutrophil homeostasis. Predicted to be located in cytoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in basal plate midbrain region; brain; neurons; and spinal cord. Human ortholog(s) of this gene implicated in extraskeletal myxoid chondrosarcoma. Orthologous to human NR4A3 (nuclear receptor subfamily 4 group A member 3).

NR:

description
nuclear receptor subfamily 4 group A member 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167704 True 1527 lncRNA 0.46 2 16894352 16895923

Neighbor

gene id symbol gene type direction distance location
alg2 alg2,LOC107706186,LOC107595974,LOC107723517,LOC107687815 coding downstream 73597 16817726 ~ 16820755 (-)
LOC122360322 frrs1l,LOC107595962,LOC107657722,LOC107723406,LOC107593684 coding downstream 90245 16799360 ~ 16804107 (-)
tmem245 LOC107687814,LOC107595951,LOC107706205,LOC107723436,LOC107657721,LOC107593683 coding downstream 95152 16784020 ~ 16799200 (-)
ino80c ino80c,LOC107706244,LOC107723410,LOC107657632,LOC107596621,LOC107593731 coding downstream 195503 16697321 ~ 16698849 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107687812,LOC107593682,LOC107723551 coding downstream 201224 16688215 ~ 16693128 (-)
erp44 erp44,LOC107706132,LOC107593692,LOC107723539,LOC107596038 coding upstream 19595 16915518 ~ 16928686 (-)
tex10 tex10,LOC107657731,LOC107723457,LOC107706105,LOC107596045,LOC107593696,LOC107689903 coding upstream 55256 16951179 ~ 16968820 (-)
rbm12ba LOC107706078,LOC107596631,LOC107689919,LOC107657732,LOC107723523,LOC107593697 coding upstream 82849 16978772 ~ 16981410 (-)
trnat-ugu_49 NA coding upstream 94379 16990302 ~ 16990374 (-)
nacad LOC107706031,LOC107689890,LOC107593698,LOC107723474,LOC107657733,LOC107596337 coding upstream 114453 17010376 ~ 17022578 (-)
G113569 LOC107706170,LOC107657725,LOC107593690,LOC107723503 non-coding downstream 1774 16888321 ~ 16892578 (-)
G113504 NA non-coding downstream 72172 16821630 ~ 16822180 (-)
LOC122360493 NA non-coding downstream 157070 16724418 ~ 16737282 (-)
G113473 NA non-coding downstream 200062 16693930 ~ 16694290 (-)
G113470 cdh17,LOC107595837,LOC107706528,LOC107687825 non-coding downstream 214240 16679684 ~ 16680112 (-)
G113587 NA non-coding upstream 14412 16910335 ~ 16911882 (-)
G113588 NA non-coding upstream 17737 16913660 ~ 16913962 (-)
G113604 NA non-coding upstream 93787 16989710 ~ 16989978 (-)
G113605 NA non-coding upstream 95868 16991791 ~ 16992379 (-)
G113617 NA non-coding upstream 171600 17067523 ~ 17078008 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other downstream 212174 16586084 ~ 16682178 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 654846 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 665886 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 753117 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 880601 16012964 ~ 16013751 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 916447 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1299548 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 1461494 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 1596703 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 1753596 18649519 ~ 18650609 (-)

Expression


Co-expression Network