G113569 (LOC107706170,LOC107657725,LOC107593690,LOC107723503)


Basic Information

Item Value
gene id G113569
gene name LOC107706170,LOC107657725,LOC107593690,LOC107723503
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16888321 ~ 16892578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU167706
CTACACCTGTGATCACTGTGACGACCGCTAGCAGCGTGACAAAAGGGgtgtaaatacacaaatacaagaACGACAACAGGAAGTAACAACTGAAATGCATAGAAAGGGATTTCAGAGTGTTTTTCAGAGGTTGCGTGTTACCTGTGAGCAGCACTAAGGCGCACAAGCAGGAGAACGCAGGCATATCAAGGTTGAGACTCTGCAGGTGAGTGCTGAAGTCTCGGATGGAGTCCAGCCATTCGCCGAAGCCACGCAGGCACTGCTGCCGGTGAAGGACCAGGCCTGTGCAAAACACGAACTTCTCGTCTGCCAGCAAAACCTGTTGGCGAGGCGAAGCACGAAAAGCTCGAGGAAGGCAGAGTCAATGAGCAGGTTCTGGTCATCACGGTGAAGCTCAGAGAATCCAGGCAGCCGTTCTGCCCAGCAACGCGTCACCTCCATGGAGCCGGTTAGCACTCTGTAGAACATCTGGATCTGCTGAGACTCAGATAGACCCACTGGCTCCACCGCA

Function

NR:

description
PREDICTED: probable nuclear hormone receptor HR38 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167706 True 511 lncRNA 0.53 2 16888321 16892578

Neighbor

gene id symbol gene type direction distance location
alg2 alg2,LOC107706186,LOC107595974,LOC107723517,LOC107687815 coding downstream 67566 16817726 ~ 16820755 (-)
LOC122360322 frrs1l,LOC107595962,LOC107657722,LOC107723406,LOC107593684 coding downstream 84214 16799360 ~ 16804107 (-)
tmem245 LOC107687814,LOC107595951,LOC107706205,LOC107723436,LOC107657721,LOC107593683 coding downstream 89121 16784020 ~ 16799200 (-)
ino80c ino80c,LOC107706244,LOC107723410,LOC107657632,LOC107596621,LOC107593731 coding downstream 189472 16697321 ~ 16698849 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107687812,LOC107593682,LOC107723551 coding downstream 195193 16688215 ~ 16693128 (-)
erp44 erp44,LOC107706132,LOC107593692,LOC107723539,LOC107596038 coding upstream 22940 16915518 ~ 16928686 (-)
tex10 tex10,LOC107657731,LOC107723457,LOC107706105,LOC107596045,LOC107593696,LOC107689903 coding upstream 58601 16951179 ~ 16968820 (-)
rbm12ba LOC107706078,LOC107596631,LOC107689919,LOC107657732,LOC107723523,LOC107593697 coding upstream 86194 16978772 ~ 16981410 (-)
trnat-ugu_49 NA coding upstream 97724 16990302 ~ 16990374 (-)
nacad LOC107706031,LOC107689890,LOC107593698,LOC107723474,LOC107657733,LOC107596337 coding upstream 117798 17010376 ~ 17022578 (-)
G113504 NA non-coding downstream 66141 16821630 ~ 16822180 (-)
LOC122360493 NA non-coding downstream 151039 16724418 ~ 16737282 (-)
G113473 NA non-coding downstream 194031 16693930 ~ 16694290 (-)
G113470 cdh17,LOC107595837,LOC107706528,LOC107687825 non-coding downstream 208209 16679684 ~ 16680112 (-)
G113439 epb41l4b,LOC107706320,LOC107687806,LOC107596310 non-coding downstream 280641 16606714 ~ 16607680 (-)
G113567 nr4a3,LOC107687818,LOC107706170,LOC107723503 non-coding upstream 1774 16894352 ~ 16895923 (-)
G113587 NA non-coding upstream 17757 16910335 ~ 16911882 (-)
G113588 NA non-coding upstream 21082 16913660 ~ 16913962 (-)
G113604 NA non-coding upstream 97132 16989710 ~ 16989978 (-)
G113605 NA non-coding upstream 99213 16991791 ~ 16992379 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other downstream 206143 16586084 ~ 16682178 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 648815 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 659855 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 747086 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 874570 16012964 ~ 16013751 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 919792 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1302893 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 1464839 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 1600048 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 1756941 18649519 ~ 18650609 (-)

Expression


Co-expression Network