onecutl (onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477)


Basic Information

Item Value
gene id onecutl
gene name onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 17812370 ~ 17830977 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168192
CTTCAATCAATGGTAGTTTCATGTGGCCTCTCAGCCCTGcagtgacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgcgtgaaagAGCGATTGAAGAACAATTATCAGTATAAAGACCAAATGGGAATGACAATCGGAGCAAGAGAGGGGTTCTTGCTGATCTTATGATTGCTTatccctccaaaaaaaaaaaaaaaaaaaaagtgttaccgtGTAAAAGTGACAATAGagaccaaaataaatgttaaatatgtttgtcTCTACAAATATGAtgcaattatgttttaaatgtgtcataTGAATCACccgaataaaaatatgattttagcAAACTTGATTGTTGGATCACAACGTAGGCTGACAGAATTCATTCTCTCGAGGCGTTTTTGGCATCTGGAGATCCACTTATTAACGGTTCAGATAAGCAGACTGAAAAGGTAgcaagtgttttctttttccttttaccTATCACTCATTTAAAATCTCTTTCTGCTGGTGTGAACATCTGTGTCATTTTATGCCATTCTCTCCCTTGTGTTACCTTATGAATGTGGCTAATCAACCAAAGGTGTAAAAATCACAGCAATCTAAATGTCAATCATAACTGGACATTGTGTGCTGATCTTGAAAAATCCTTTAATACCTCATGTGAAACTGTTCGTTGTGATGTTGCACTGAATAAAACC
>XM_043262034.1
agagagaggagagaaagagttGGGGCCGAGATCGATGAGGATACAGAAGGGCAAAACCACAGAGATAATGACAGCGACGGAGCGCGATGCTTAGACGCACATCGGCGTTCATTTTTGACACGGTTGCGGCATAACGAAGTCCGGACATCGGACAAAAATCGCACGGCCTTACGCGTCATTTGTGTTGCATCCTCGGCAGTTGTGGTCCGGCGAGAATCTGGCGGATAACGGGAGTGAAGGACCGGACCGAGCCgttgctctgttttttttgAACACCGAAATGTGCTGATGACACACAAAAGTCGTTGTTACGTAAAACCGACTGTTGTGTGATGGTAAACTCGGGATTTCTGCAGGTGTATAGAATAACCCATCCTATTATCGGCTTTTGATTGTGTTTTGGAGAGGCTGTTTCGCTTCTCTCCGTCGTGTCGGATAAGCTACGTTGTGAGCTTTGGTCAACAAGACAAAAGCAAGACTCACATGGATAAATTCAGAAGCATTGATGGAACACAGAATTTGCTTGCATGACCCAAGATGGTGCCACTGTGATGAAATGTCTCTGAGAGTACACTGAAATCAGATTTTGAGATATAAACAGCATCAGGAACTGTTTTAGATCGCATTACAGAAACCACACTCTAGACAGGTAGAAAAAACGCATCAGCTGGAATTTAAAGAAGAAGTGGAGCAAGGAAGGCACAGTTATGGATGGTAATATGGGTGAGATGTCCGTGCACAGCCACGTAGAGCTGGCACACAGTCAGGACAGCCGAGCCATGCTGCACTCTCGGGATCTCGCGGCTGCTTTCCCTCGTCCCTCTCTGGGAGGCCCCGCCATGGGCCTGGAGTCAGACCACCAGAGCGCCGCGTATGACCACAGCATGGCAACTCTGGGGTACGGTAGAGACCCACCAACCAGCTGCGGAAGCACCTACACCACACTGACACCCCTACAGCCCTTTGATGACAAAttccaccatcatcatcaccatcccTGCCTGCCTGTGAGCAACGTCATCGGCAGCTTCACTCTCATGCGAGAAGATCGAGGCCTGGGAGGAAACTACTATACCCCGTACGCAAAAGACTTTGGTTTGGGTCAGGGTCTGTCTCCACCGTTGGGCAGTGCAGGCCTAGAGACCGCCATGCATGGCTATGGCAGCCTGGGAAGTCAGAATGGACACAGTAGCCAGATGCTTCCAGGTGGCCATGAGGTCCATATGGGCAGCAATGGGGGTAACATCTGTCGAACAGCACCAGACTTTGGGAGGGAGATGTCACCGCCCTCTCTGGGGGGCGAGCATGGGGTCAGCCACCAGCTAAACAAAATGGATGCCCATCAGCACACTCCCACCTACCACCCCCATATATACAACCAGAGTTATCAGCACCACCTTCAGAGCCAACAGGCTTCCAAACTAGGGGATCTTCCCTCTTCTTCCCcttcctcctccagctccagctTGGGAAGGGAGGGCATGCTGGCCAGCTCTCAGAACGGCGGTGGAGGGGAAGAGATCAACACCAAAGATGTGGCTCAGAGAATCATCACTGAACTGAAGAGGTACAGCATCCCACAGGCCATTTTCGCAGAGCGGGTTCTGTGCAGGTCTCAGGGCACTCTGTCAGACCTGCTTAGGAACCCCAAACCTTGGGGGAAACTCAAGTCTGGCCGCGAAACCTTCAAGAGGATGTCCCGCTGGCTACAGGAGCCAGAGTTTCAGAGGATGGCCTCGTTACGTCTGGAAGCTTGTAAGCGTAAGGAGCAGGAGCAATCCAAACTAGAGCGCAACCAAGGGCCCAAGCGCACCCGGCTAGTCTTCACGGACCTGCAGCGTCGCACTCTCATGGCCATTTTCAGAGAGAACCACAGACCGACCAAAGACCTGCAGATCACCATCTCTCAGCAGCTTGGCCTTGAGCTTTCCACAGTAAGCAACTTCTTCATGAACGCTCGCCGCAGAAACCTCAACCGCTGGACCGAAGAGGGCCGCCCATCCTCCACTGGCTCATCGGGGTCCAGCACTGCTTCTCCAGCTGTGACCTGCTCCACGGCATGATGGGAAAATGAGCCGTTTTACGCTCTGCACAGCACAGGTTTACCTGTAGCTCCTAGAGTTTGAGATTTTTAATCAAGGGTGTTTTTGTATACAAATCAACAGCATATGAAACCAAAGATGAAGTCTGATGTTCGCAATGTCTAGATGAGACAGGATCTGATTGTAGTTTTAGCGTCGATTATTTTAGCGTTAATCGCAATGGATGGGCCCGACGCATCAGGGCTTATGAAATCACTCACAAATCAATATGGAAGGTTATGAAAAGCTACTGAATAGATATTGAAtctattaattttgtaattcGTTACAGCGTCTAAAATCAGTGCAAATGTTTCTGGTTTTTCTTTGTTGATCATGACAgtcaaaatgatatttttagagttctcgaaagagagagagatgattttACAACAAATGGAAAATTAATGACCAAAGAAACAAAGGAGGATGCAAACGAATCTTTCAGAAAATCTTTTAAAGGGAAAAACTACTGGATAAAGAAGctgaaaccaaaatatgaacatttttgagagcttgttttctttttatacacCTTCGTTACAAAAAGCCAGGCCTCATAGTCCAAAAAAGACATCTGCTGTGGGACAACTACAGTCTCAGCACAGGACTGGAGTCGCATCCTCTCTGACAGTTCGAGGAGGAACTCAGCCATGACTCTTTTTGCAACAGACGTTTAACTTGTTGGTGAGTTTCCGCTGACAGAATGGCTGCGAAGAGGAATCCAGGACGCTCTTGCATACTTTCCATctgatttcaaatgatttcttagATGTCACACTGAGGATGGAGAAGTccgtttgtttttgtaaaaatttcaAGCACACAATCTGGCCGAAGGCTGTTCGTTACCGGAAAAAGCTCAAAATCTCAAAGAACCTGATGacaaaatacacacagaaaGCTTGAATTGAACATGAACTGAGAAccactttgtgtatttataattatttatgtatttatttccaaTCTTctagctatttattttatttatttgctagtTACCGTCAGTATTTATTTCACAgagtgttgtttgtgtgtgaaaaatgACCCTATCTCTGATAGGAGTCCCAATACCAAAGATGAATATTTGTCCTCCCTGAATGTCCGACGTTTCTCATCTCCTGAACGCTGTGTTAGTACTTCGATAGCCAAGCTACCATCCATGTTCCCCGTTCACGTGTGCTGCATGTCTAGACCCTTTAGGCCACAGCTCGACCAAACAAATCGAGACTCAGCGTGAtcgtaaaaaaaacagcacacaagTGGCTGGGAAGTCGAGACGATTCTATATTTAGGCTGTTGAACTGTGATCTCCTCACTGCAGTCCACATTTACTGTACGGTGATTGTACGTGCTGTGCCGTGGTCTCTCGGGGTGGGCCGTCGAGGGAGAGATCGTCCCTTTTTCAATGCTCTTTCACGTTCCCCTGTGTTTAACCTTTGCAGGGCATGTAGTGAGGCCCCTTCACAGCACACACTTGAAAGAGGGCCCATGAAAGAGGCCATCGACTTTTGCCGACTTCAAAGAGGCCCTTTTTATCTGTGTCCTCTCGGCGGCTGAGGCCGGTGCTCGGCACTCGGTAGGGCCCATGGGCTTAGGGCTTTCACGGGGAGGGGTGGCAGATCAGAGGCTAGCAGCATTACCGAATCACGGTGAGGGAGGGGAGGGGCGGTTGAATGGGAGTTTGGGGATGTGAATTAAAGTTTAATGAGCGACAATTGTAAGCGTGCTGCGCGAGGGGCAAAGGGTGTCAGCGTGTGAGCGTCTCAACTCTCCAGGTCACCCTGTTGCAGCACTGGTGGTTAGCCGGGCCTCTCTTCTTGTAGAGATGTAATGATTTAGGTTATAATAATTTGCAGACTTAAGGCGGTAGATGGTTAGAGATCACTCGACGACTTGTAGCGTCCCGAAGATCACGTTTAGCAGCTCGTGGCAGACGCGTCTAACGTAATTTAGTATTTGGCCCCTCCTAGTGGACGTTTTGTTCACACGCTTACCGAGAGGAGCATAAATCACACCATGTTCTCGTAGTGTTTAACCTCTTCAGATGCATTTGAAAGACTTACTACAGTATGTAAATCTTAAGCGATATTTTCAACTGAGGGGAACCCGTTTGGCAATTTTTGTTCTACCCGACAGCTCTAATTTCATCTACCTCAACTGTGTGTGATGTGTCGTGTAGCTGAGATGTAACTGTACCAAAGATCCCATCCATTCAGGGAGCGTCTGTGCGTTACTAAGTTTTTATAGCCAAATGTGCTGGAATCAATCCGTGAACACAACTAAATCACAGCCCTACCTGCAGGCAGAGAGAaccttgtttgtgtgtgtgtgtgtgtgtgtgcgtgagagaagAGCGATTGAAGAACAATTATCAGTATAAAGACCAAATGGGAATGACAATCGGAGCAAGAGAGGGGTTCTTGCTGATCTTATGATTGCTTatccctccaaaaaaaaaaaaaaaaaaaaagtgttaccgtGTAAAAGTGA

Function

symbol description
onecutl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in nervous system; neural plate; neural rod; and neural tube. Orthologous to human ONECUT1 (one cut homeobox 1).

NR:

description
PREDICTED: hepatocyte nuclear factor 6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168192 False 704 lncRNA 0.37 2 17812370 17830977
XM_043262034.1 True 4577 mRNA 0.48 3 17812833 17820948

Neighbor

gene id symbol gene type direction distance location
lingo4b lingo4b,LOC107741755,LOC107689855,LOC107717768,LOC107587835,LOC107598021,LOC107663276 coding downstream 36011 17765567 ~ 17776359 (-)
si:ch211-113g11.6 si:ch211-113g11.6,LOC107717770,LOC107689856,LOC107663265,LOC107597982,LOC107741775 coding downstream 50131 17749233 ~ 17762239 (-)
tlr18 LOC107689857,LOC107717772,LOC107663243,LOC107597981 coding downstream 63981 17740782 ~ 17748389 (-)
s100a1 s100a1,LOC107598020,LOC107587912,LOC107717776,LOC107689908,LOC107663298 coding downstream 72817 17738115 ~ 17739553 (-)
isg20l2 LOC107717775,LOC107663234,LOC107741778,LOC107549246 coding downstream 80032 17728856 ~ 17732338 (-)
hormad1 hormad1,LOC107587829,LOC107598012,LOC107663340 coding upstream 6158 17837135 ~ 17840555 (-)
scnm1 scnm1,LOC107689842,LOC107741746,LOC107663374,LOC107732480,LOC107597991 coding upstream 45622 17876599 ~ 17879013 (-)
tnfaip8l2b tnfaip8l2b,LOC107741744,LOC107587822,LOC107689840,LOC107663392,LOC107597992,LOC106605333,LOC107741773,LOC107587875,LOC107689897,LOC108262134,LOC108441933,LOC107598015,LOC107732462 coding upstream 52674 17883651 ~ 17900687 (-)
cct3 cct3,LOC107741740,LOC107704884,LOC107732470,LOC107587818,LOC107671634,LOC107597996 coding upstream 314849 18145826 ~ 18151937 (-)
pdia7 zgc:77086,LOC107704886,LOC107741739,LOC107587817,LOC107597998,LOC107671642 coding upstream 321691 18152668 ~ 18157370 (-)
G113901 NA non-coding downstream 2317 17802248 ~ 17810053 (-)
G113896 NA non-coding downstream 13696 17797824 ~ 17798674 (-)
G113832 NA non-coding downstream 142196 17634793 ~ 17670174 (-)
G113672 NA non-coding downstream 510812 17301329 ~ 17301558 (-)
G113637 NA non-coding downstream 625113 17186945 ~ 17187257 (-)
G113905 NA non-coding upstream 12946 17843923 ~ 17847310 (-)
G113911 NA non-coding upstream 43843 17874820 ~ 17875837 (-)
G113914 lysmd1,LOC107587824,LOC107741747,LOC107732482,LOC107732481,LOC107597990 non-coding upstream 48272 17879249 ~ 17880317 (-)
G113918 NA non-coding upstream 58827 17889804 ~ 17890031 (-)
G113920 NA non-coding upstream 70499 17901476 ~ 17901693 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other downstream 1130192 16586084 ~ 16682178 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 1572864 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 1583904 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 1671135 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 1798619 16012964 ~ 16013751 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 364494 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 526440 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 661649 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 818542 18649519 ~ 18650609 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other upstream 838630 18669607 ~ 18671274 (-)

Expression


Co-expression Network