rpz (rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233)


Basic Information

Item Value
gene id rpz
gene name rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18812238 ~ 18821110 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168710
AAGAAGAAGTACAGTCCGGATTGGGACTTTGGAGAGGGAGGTAGCAATCTGAAGAGaaccttggaaagaaagaaaacaagatctCCATTTGGGAAATCCAGTTTTTCTCACTGCAACGTAAGACTTCACATTCCTGTCTTAACTGGTTAAAAGCGGCACTCATTCTTTGTTAAACAAAGTGAAAATGTGACCTTTTTCTCTAAGCATACAATGCGCGTTATTTAGTTACCCGCTGAATGAAATCTGCCGGCACTCTATTTACAAAACGAACCCACAGAAAGCCCAGCTCACAGCGTGCATCTGTCATGAACTTGACTCTTACAGCTGTTTAAATGGCGGTTGACACGCACAGTTGCCCGACAGCCTTTCCTTTCACCATATATTCATCCTTTGTTTACGCCTCAGTGGGTTTTTCTCACTTAACCAGAAAAGCCACAACAAGACATACCTGCTTCCTAAATTTTTACCTCCTCATTCAAGAAGCGAGAGTGGAATGAATAGAATATTTGATGTAATTGCTGCATTTAATTGACTGTAAGAATAGTTTTACTAACCTATCTACTAATGTCTGAGGCCTATAAACTATTTTCTCCCACATACACAcgcactatatatttttttgactcatatattaatattagacTAGTCGAAGTCAGaatttcctcctttttttttctacacagACAAAACCAAATGATCTCTTATTTACTCATCTGCCGCCTAGTTATTCATTCTTGTCTACAAGTGACAAGATCCATGAACTAGAACTCGGCAGAACAGCATTGCAGCCATTTTCCGtgcagggtgtgtgtgtgtgtgtgtgttcttcagaAAGGGGATTGCGGAAAAgctgcatactttttttttcccttctaaACCAATCGGCATTGCTGTTGCATGAGTCACTCCCACACCCTACCCTTATATGACAAAGAGGGGAGGGGCTGTTTCTCAGACCGGACAGTGAAATGGTGGCTGCTTGtacaaaaacagcagcagcagcagcattagGAACTGAGCAGCTACGGACGCATTTACAGAATCAGCCAAGACTGAAAGCCCAGAAGAACCAAAGACTCATCTATGGCAGAAAAACAGCAGATCAAAGTGACTGCGGTCAAAGTGCTGTGCTACGTGGAGAAAGTCTCCTCCTTCGCCGCCAACATTGACCCTCTCTTTGGGATTGTGACTTCAGTGGTCGGAGTGGTCAGGAAAGGCCTCGTGGACGAGGAGGACAATGAGATGGATAAGGACTTCAAACAGATCCACGAGAAGCTAGAAACCATCTCAGAGAAAAACAAGCAGACCCTGCGAAAGATTCGCATCAACGAAATCAACGAGACTTACGGTAAACACGAGGAAACTATCAAGCATCAGTACGATGCTTTTAACACCATGGTGGAAAGAGTTAAACTGGACCCTGACAATTCAGATCGTCACATGGGCGAGTTTGTGAAGATCTACGAGGGCGATGGGATGGACATGAGCTTAGATACGTATTACCGTGGATTAAAGGGCACCTCTATGTTTGGGAAGCCCATCCTGCAGGTTTACCTGGAAAGCTgccaaagaaacaaaaaggtgATGGAGGCCCGCTGCTCTCACATCATCCACCTGTTCTACATCGGTCTAATGGCAC
>TU168711
AAGAAGAAGTACAGTCCGGATTGGGACTTTGGAGAGGGAGGTAGCAATCTGAAGAGaaccttggaaagaaagaaaacaagatctCCATTTGGGAAATCCAGTTTTTCTCACTGCAACGTGAACTAACCGATAAGACTATCTTCCTCCTCGGACACAATGGCTGACAATGAGGTATATGAGGACCCAGAGAAGCTGAAGAGGGGTCTGGTGAAGGTTCTGGAATGCGTGGCC
>TU168713
AAGAAGAAGTACAGTCCGGATTGGGACTTTGGAGAGGGAGGTAGCAATCTGAAGAGaaccttggaaagaaagaaaacaagatctCCATTTGGGAAATCCAGTTTTTCTCACTGCAACGTGAACTAACCGATAAGACTATCTTCCTCCTCGGACACAATGGCTGACAATGAGGTATATGAGGACCCAGAGAAGCTGAAGAGGGGTCTGGTGAAGGTTCTGGAATGCGTGGCCACCATCTCG
>TU168714
AAGAAGAAGTACAGTCCGGATTGGGACTTTGGAGAGGGAGGTAGCAATCTGAAGAGaaccttggaaagaaagaaaacaagatctCCATTTGGGAAATCCAGTTTTTCTCACTGCAACaAAGGGGATTGCGGAAAAgctgcatactttttttttcccttctaaACCAATCGGCATTGCTGTTGCATGAGTCACTCCCACACCCTACCCTTATATGACAAAGAGGGGAGGGGCTGTTTCTCAGACCGGACAGTGAAATGGTGGCTGCTTGtacaaaaacagcagcagcagcagcattagGAACTGAGCAGCTACGGACGCATTTACAGAATCAGCCAAGACTGAAAGCCCAGAAGAACCAAAGACTCATCTATGGCAGAAAAACAGCAGATCAAAGTGACTGCGGTCAAAGTGCTGTGCTACGTGGAGAAAGTCTCCTCCTTCGCCGCCAACATTGACCCTCTCTTTGGGATTGTGACTTCAGTGGTCGGAGTGGTCAGGAAAGGCCTCGTGGACGAGGAGGACAATGAGATGGATAAGGACTTCAAACAGATCCACGAGAAGCTAGAAACCATCTCAGAGAAAAACAAGCAGACCCTGCGAAAGATTCGCATCAACGAAATCAACGAGACTTACGGTAAACACGAGGAAACTATCAAGCATCAGTACGATGCTTTTAACACCATGGTGGAAAGAGTTAAACTGGACCCTGACAATTCAGATCGTCACATGGGCGAGTTTGTGAAGATCTACGAGGGCGATGGGATGGACATGAGCTTAGATACGTATTACCGTGGATTAAAGGGCACCTCTATGTTTGGGAAGCCCATCCTGCAGGTTTACCTGGAAAGCTgccaaagaaacaaaaaggtgATGGAGGCCCGCTGCTCTCACATCATCCACCTGTTCTACATCGGTCTAATGGCAC
>TU168715
AAGAAGAAGTACAGTCCGGATTGGGACTTTGGAGAGGGAGGTAGCAATCTGAAGAGaaccttggaaagaaagaaaacaagatctCCATTTGGGAAATCCAGTTTTTCTCACTGCAACAATCAGCCAAGACTGAAAGCCCAGAAGAACCAAAGACTCATCTATGGCAGAAAAACAGCAGATCAAAGTGACTGCGGTCAAAGTGCTGTGCTACGTGGAGAAAGTCTCCTCCTTCGCCGCCAACATTGACCCTCTCTTTGGGATTGTGACTTCAGTGGTCGGAGTGGTCAGGAAAGGCCTCGTGGACGAGGAGGACAATGAGATGGATAAGGACTTCAAACAGATCCACGAGAAGCTAGAAACCATCTCAGAGAAAAACAAGCAGACCCTGCGAAAGATTCGCATCAACGAAATCAACGAGACTTACGGTAAACACGAGGAAACTATCAAGCATCAGTACGATGCTTTTAACACCATGGTGGAAAGAGTTAAACTGGACCCTGACAATTCAGATCGTCACATGGGCGAGTTTGTGAAGATCTACGAGGGCGATGGGATGGACATGAGCTTAGATACGTATTACCGTGGATTAAAGGGCACCTCTATGTTTGGGAAGCCCATCCTGCAGGTTTACCTGGAAAGCTgccaaagaaacaaaaaggtgATGGAGGCCCGCTGCTCTCACATCATCCACCTGTTCTACATCGGTCTAATGGCAC
>XM_043261507.1
CTCTTTTGCAGTGTTTGCTGGGAAGAAGAAGTACAGTCCGGATTGGGACTTTGGAGAGGGAGGTAGCAATCTGAAGAGaaccttggaaagaaagaaaacaagatctCCATTTGGGAAATCCAGTTTTTCTCACTGCAACGTGAACTAACCGATAAGACTATCTTCCTCCTCGGACACAATGGCTGACAATGAGGTATATGAGGACCCAGAGAAGCTGAAGAGGGGTCTGGTGAAGGTTCTGGAATGCGTGGCCACCATCTCGCCCGCAGCAGCGGTGGTCAATCCCATCTTGGCGTGGCTGGATCTCTCATCCGGAGTGGTGCTGCACCACGTGGACCACGAGGACATCCAGAAACTCAAGCGCGAGTTCGCAGCGTGGAATCGAGCAATCGACGAAATCTCACAGCAGAACCGCCAAGCCCTGCTGCAAATCAGGAAGGAAACGGTGGACAAACAGTACCACGAGGTGGAAGAAAACATTCGCAATCAGTTCCGCAAATTCATGGAGATCGTGGAGGCCAAACCGGAGAACGTGCAGCGCAAGAAGGATGATTTCGTAGAGAGCTTCATCAATGATAAAGATGACCAGAACATGTACACGCTTTATGAAGGTGTGATGGGGAAGCGCAAGCTCTTCAGTCAGCCCATCCTAGACGTCTACATGAAGAAGCACTCGCAGGGTGACCAGCGCGTCATGGAAAACCTGTGCACTCGACTCGCTCACCTGTTCTGCATCGGTTTCATCGCTCTGATGGGCTACTATGGCATCATGGGGGATGATCTGCAATCTCGAAACGAAGAGTGGGAAGAGAACATGAGGAACGTGCAGGAGAAAATGCAGGAGGTGCTGAGGAGATGCAAGTGATCGTGAAAGCTTTCTGCGCAACCCAAGCTCTTTATTGCCTTTGCCTTTTCGTCTTACACTAATAGACTTCATCGACATGCAGCTTTATCTCCCTGATGACTGAAGGTCATGCTCAAGTGTACACAGTCATTTCCTTTagctcttgtttttttgtttttaatcgcACAATTGCATTTCTTCACGCCTCGCCTCCCTTTATCACTACATCACCGAGTTATTTCACACTAATCTAAAGAATGCTGGTTGTGGTATAAATATTATTCAAGTTAATAAGCAGTGTCATCTTGAAAACTGACTACATGATGAACTACTTGTTTCATGGATGAATACATGgtatattcaaatgtattctataaataaatataatttaagaaac

Function

symbol description
rpz Acts upstream of or within fin development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; pectoral fin; pectoral fin bud; somite; and vertebral column.

NR:

description
PREDICTED: uncharacterized protein LOC107671470

GO:

id name namespace
GO:0033333 fin development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168710 True 1639 TUCP 0.44 3 18815216 18821088
TU168711 False 231 lncRNA 0.47 3 18813229 18821088
TU168713 False 240 lncRNA 0.47 3 18813220 18821088
TU168714 False 925 TUCP 0.47 4 18815216 18821088
TU168715 False 716 TUCP 0.47 3 18815216 18821088
XM_043261507.1 False 1241 mRNA 0.46 6 18812238 18821110

Neighbor

gene id symbol gene type direction distance location
LOC122360857 NA coding downstream 14164 18797261 ~ 18798074 (-)
rpz5 NA coding downstream 30143 18780999 ~ 18782095 (-)
LOC122360855 NA coding downstream 55841 18752790 ~ 18756397 (-)
LOC122360727 LOC107587797,LOC107714594,LOC107704906 coding downstream 149748 18653732 ~ 18662490 (-)
phf20l1 LOC107704904,LOC107587800,LOC107671837,LOC107724788 coding downstream 168949 18633238 ~ 18643289 (-)
nr2f5 nr2f5,LOC107592459,LOC107592141,LOC107726692,LOC107671473,LOC103038004,LOC108433883,LOC108256176,LOC105891836,LOC105005680,LOC100380645 coding upstream 24634 18845744 ~ 18859744 (-)
bola1 bola1,LOC107592543,LOC107671409 coding upstream 60717 18881827 ~ 18883697 (-)
sv2a sv2a,LOC107592458,LOC107688240 coding upstream 63443 18884553 ~ 18916456 (-)
mtmr11 mtmr11,LOC107592457,LOC107688241,LOC107726680,LOC107671475,LOC107592143 coding upstream 106971 18928081 ~ 18950938 (-)
otud7b otud7b,LOC107726676 coding upstream 133219 18954329 ~ 18976693 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding downstream 71409 18739754 ~ 18740829 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding downstream 123843 18687166 ~ 18688395 (-)
G114231 NA non-coding downstream 263299 18548188 ~ 18548939 (-)
LOC122360486 NA non-coding downstream 267558 18528871 ~ 18544680 (-)
G114075 NA non-coding downstream 436624 18373968 ~ 18375614 (-)
LOC122360016 apoa2,LOC107688286,LOC107728486 non-coding upstream 164293 18985403 ~ 18987926 (-)
G114399 NA non-coding upstream 171752 18992862 ~ 19063171 (-)
G114401 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 non-coding upstream 191545 19012655 ~ 19041766 (-)
G114430 NA non-coding upstream 385009 19206119 ~ 19262830 (-)
G114458 NA non-coding upstream 459318 19280428 ~ 19283527 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 113831 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 140964 18669607 ~ 18671274 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other downstream 161629 18649519 ~ 18650609 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other downstream 291951 18492626 ~ 18520287 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other downstream 444965 18357417 ~ 18367273 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other upstream 595852 19416962 ~ 19421094 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other upstream 775322 19596432 ~ 19657724 (-)
G114715 NA other upstream 1345685 20166795 ~ 20177758 (-)
G114793 NA other upstream 1620855 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 1815015 20636125 ~ 20650937 (-)

Expression


Co-expression Network