G114479


Basic Information

Item Value
gene id G114479
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19379415 ~ 19452882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168980
TGTTTTTCCAAACACTTTaattagtttctttttaaactgcattacaGTAGCCTTTTATCTCATATAACTTTATATCAGTTATTCTCTTCACATCAACACAACGTGATTACACCCAGAATGACAACAACTACAGCAATGCTTGTGGAGTGACACTGACACAAATACCGTCAAAAGAAactaacacgcacacacagacgtCTACAGAGACGAACGCGTCTTGTAGGTGAGAACAGGAATGCTAAGGCGTGTCACTATGGCTTCAGCTATGAAATGAGTGCGTTGAAAAGAAGGAATGGTAGGGCCTTTCTGCTGTCGCAAAACTTGGTGAGTTACTCTTTGGAGTGCATGTACACTAACAGGTCAGCAACACGATGGCTGTAGCCAAATTCATTGTCATAcctGAGATGAGTTTGACAAAGTTGTCGTTGAGGGAGATGCCTGCACCCGCATCAAAGATTGAAGAGTGAGTGTCACCAATAAAGTCAGAAGAAACAacctaaacaaaaacacaaattaaatatgattcCAATTTCTGTGCATCACTGTATGAAAATCTACATGTTGTGGAATTCTAAAAGAATTTTACTGGCAGGACTTACGGAATCCTCTGTGTATCCCAGAATTCCCTTCATTGGTCCATGAGCGGCCTTCTTCACAGACTCTTTGATGTCAGCGTAGCTGGCGGGCCTTGAAAGGCGGCAGGTGAGGTCAACGACAGACACGTCGGCGACTGGCACACGGAATGCCATTCCGGTCAGCTTGCTACCAAACAAAGACAGATGGTAAATGTCTCCAGTCAACATCAAAATCGATCAGTTGTCTTTTGACGTGTGTTGCACTGACCCGTTAAGCTCAGGAATGACTTTGCCCACAGCCTTGGCAGCACCAGTGGAGGCAGGGATGATGTTCTGGTGAGCACCGCGTCCGTCACGCCAGGCCTTGGCAGAGGGGCCGTCCACTGTCTTCTGTGTGGCGGTGTAGGCATGGACTGTTGTCTGTGAAGAggtacagaatttttttttttttatgatttttccattttgttatggttttaaaagaagtctatTATGCTCAACAAAGCTgcatacatttgattaaaacacaATCATatagtaatttaaaatagctgctttctactctaatatattttaaaatgtaatttattcctatgatgcaaagctgtattttcatcatcgttacttcagtcttcagtgtctgatttctaaaaataatttgttgtcattatcaatactgaaaactgttgtgctgcttaatattcttGTGGacactattattaatttttttatgattgtgATGAttctaaagttaaaaataactgcatttatttgaagcaaaaatctttagtaacattataaatatgctgtcacttttgatcactttttgatacatttattcagcgtCATTACTGAATTTAcatgttatttcttttaaaaaaattgactgcaaaaattttgaaaatgagcGCTAAATTTAATATAAGTAAATAGACAAGGATTTAAGTCCGAACAGGCCTTTCACACATCATGTTACCCAGTagaactattatttttatgatgtctTTTCCTTTTAGCCTTTATTCTAAGGAGAGGGTGTTTAATGATTGTCTTCTCAGTTTAAAAGTGTCAAAGTAATTTGTTTGACCAAATTTGACCCATGTCACACCAGTCATTAACTTACCATGAGGGCCTCCTCGATACCAAAGTTATCGTGAATAACTTTAGCCAGGGGAGCCAAGCAGTTAGTGGTGCAGGATGCATTGCTGTGATGttttcaacaaaaacacacgTTAATATGGTTATCTCCTAATGTTGCACAGGTCAGTTATTTTCACgtgcatgcattaaatatttcatctgCATGCTGACATACGTTAGACTCTGCTCACCTGACAATGGTCATACTGGAAGGGTCATACTTGTCCTGGTTGACTCCCATCACAAACATGGGAGCGTCAGGTGATGGGGCGGACACAACCACGCGCTTGGCACCACCCTGGATGT
>TU168981
actttatattagtttctttttaaactgcattacaGTAGCCTTTTATCTCATATAACTTTATATCAGTTATTCTCTTCACATCAACACAACGTGATTACACCCAGAATGACAACAACTACAGCAATGCTTGTGGAGTGACACTGACACAAATACCGTCAAAAGAAactaacacgcacacacagacgtCTACAGAGACGAACGCGTCTTGTAGGTGAGAACAGGAATGCTAAGGCGTGTCACTATGGCTTCAGCTATGAAATGAGTGCGTTGAAAAGAAGGAATGGTAGGGCCTTTCTGCTGTCGCAAAACTTGGTGAGTTACTCTTTGGAGTGCATGTACACTAACAGGTCAGCAACACGATGGCTGTAGCCAAATTCATTGTCATAcctgtgagaaagaaaaaagaaaagattagaGCATTGCTTTTTCtgtatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttttttcctaaattcAATCAATATGATATAGGGGAGTcagttttgagttgttttgaactgaaatgtttttaactgaTTTACAGAATTAAACTGAACTTTATTTGCACTACATTTCAGAGTGAAGACACTATACCATCCATCTTAAAGCTGTCCTACTTGCAATCTGTGAGACTACAAAAAATGCGAAAATGGTGTCttcaaaagttaaaataatcGCAAATATTCATAGTTAGAAATGCATACTGAAATGCATAtacagatttaaactgacatgagggtgagtaaacgatcaCACAATCGTCCCTTtaagttgtgttgtttttgaactTACCAGGAGATGAGTTTGACAAAGTTGTCGTTGAGGGAGATGCCTGCACCCGCATCAAAGATTGAAGAGTGAGTGTCACCAATAAAGTCAGAAGAAACAacctaaacaaaaacacaaattaaatatgattcCAATTTCTGTGCATCACTGTATGAAAATCTACATGTTGTGGAATTCTAAAAGAATTTTACTGGCAGGACTTACGGAATCCTCTGTGTATCCCAGAATTCCCTTCATTGGTCCATGAGCGGCCTTCTTCACAGACTCTTTGATGTCAGCGTAGCTGGCGGGCCTTGAAAGGCGGCAGGTGAGGTCAACGACAGACACGTCGGCGACTGGCACACGGAATGCCATTCCGGTCAGCTTGCTACCAAACAAAGACAGATGGTAAATGTCTCCAGTCAACATCAAAATCGATCAGTTGTCTTTTGACGTGTGTTGCACTGACCCGTTAAGCTCAGGAATGACTTTGCCCACAGCCTTGGCAGCACCAGTGGAGGCAGGGATGATGTTCTGGTGAGCACCGCGTCCGTCACGCCAGGCCTTGGCAGAGGGGCCGTCCACTGTCTTCTGTGTGGCGGTGTAGGCATGGACTGTTGTCTGTGAAGAggtacagaatttttttttttttatgatttttccattttgttatggttttaaaagaagtctatTATGCTCAACAAAGCTgcatacatttgattaaaacacaATCATatagtaatttaaaatagctgctttctactctaatatattttaaaatgtaatttattcctatgatgcaaagctgtattttcatcatcgttacttcagtcttcagtgtctgatttctaaaaataatttgttgtcattatcaatactgaaaactgttgtgctgcttaatattcttGTGGacactattattaatttttttatgattgtgATGAttctaaagttaaaaataactgcatttatttgaagcaaaaatctttagtaacattataaatatgctgtcacttttgatcactttttgatacatttattcagcgtCATTACTGAATTTAcatgttatttcttttaaaaaaattgactgcaaaaattttgaaaatgagcGCTAAATTTAATATAAGTAAATAGACAAGGATTTAAGTCCGAACAGGCCTTTCACACATCATGTTACCCAGTagaactattatttttatgatgtctTTTCCTTTTAGCCTTTATTCTAAGGAGAGGGTGTTTAATGATTGTCTTCTCAGTTTAAAAGTGTCAAAGTAATTTGTTTGACCAAATTTGACCCATGTCACACCAGTCATTAACTTACCATGAGGGCCTCCTCGATACCAAAGTTATCGTGAATAACTTTAGCCAGGGGAGCCAAGCAGTTAGTGGTGCAGGATGCATTGCTGTGATGttttcaacaaaaacacacgTTAATATGGTTATCTCCTAATGTTGCACAGGTCAGTTATTTTCACgtgcatgcattaaatatttcatctgCATGCTGACATACGTTAGACTCTGCTCACCTGACAATGGTCATACTGGAAGGGTCATACTTGTCCTGGTTGACTCCCATCACAAACATGGGAGCGTCAGGTGATGGGGCGGACACAACCACGCGCTTGGCACCACCCTGGATGT

Function

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168980 False 2021 lncRNA 0.40 2 19379415 19382363
TU168981 True 2444 lncRNA 0.37 3 19379415 19452882

Neighbor

gene id symbol gene type direction distance location
LOC122359968 LOC107728465,LOC107666778,LOC107726656,LOC107592540,LOC107592151,LOC107665645,LOC107665648 coding downstream 117621 19259324 ~ 19261794 (-)
dnase2 dnase2,LOC107666875,LOC107665653,LOC107592150,LOC107592517 coding downstream 129766 19243942 ~ 19249649 (-)
phf1 phf1,LOC107592451,LOC107665654,LOC107592148,LOC107726675,LOC108433894 coding downstream 168229 19197851 ~ 19211186 (-)
syngap1b syngap1b,syngap1,LOC107592452,LOC107726670,LOC107688248,LOC108433893,LOC106605281,LOC106581894,LOC101464846,LOC102301914,LOC102194363 coding downstream 183986 19095755 ~ 19195429 (-)
smg5 smg5,LOC107728478,LOC107688247,LOC107726659,LOC107671430 coding downstream 284677 19078953 ~ 19094738 (-)
upk1a upk1a,LOC107728482,LOC107666813,LOC107592444,LOC107686548,LOC107709649 coding upstream 22936 19475818 ~ 19479474 (-)
zgc:101716 zgc:101716,LOC107686482,LOC107556972,LOC107728463,LOC107709702,LOC107666748,LOC107592507 coding upstream 34875 19487757 ~ 19490733 (-)
si:dkey-122a22.2 si:dkey-122a22.2,LOC107719144,LOC107666836,LOC107592440,LOC107686774,LOC107556959 coding upstream 412844 19865726 ~ 19886663 (-)
sqlea sqlea,sqle,LOC107666801,LOC107556968,LOC107714342,LOC107686341,LOC107592438 coding upstream 558413 20011295 ~ 20020232 (-)
rnf144b rnf144b,LOC107592436,LOC107686312,LOC107556966,LOC107714339 coding upstream 569362 20022244 ~ 20027005 (-)
G114464 NA non-coding downstream 13120 19360728 ~ 19366295 (-)
G114463 LOC107666755,LOC107728493 non-coding downstream 24793 19352120 ~ 19354622 (-)
G114472 NA non-coding downstream 30310 19348813 ~ 19349105 (-)
G114438 LOC107728464,LOC107666853,LOC107728451 non-coding downstream 35642 19335877 ~ 19343773 (-)
G114468 NA non-coding downstream 70903 19307918 ~ 19308512 (-)
G114539 rims2,LOC107556969,LOC107592505 non-coding upstream 149556 19602438 ~ 19643490 (-)
G114550 rims2,LOC107592505,LOC107728483,LOC107709709 non-coding upstream 156223 19609105 ~ 19619077 (-)
G114607 NA non-coding upstream 230740 19683622 ~ 19683930 (-)
G114608 NA non-coding upstream 240256 19693138 ~ 19693393 (-)
G114611 NA non-coding upstream 266304 19719186 ~ 19719936 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 558305 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 681008 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 708141 18669607 ~ 18671274 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other downstream 728806 18649519 ~ 18650609 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other downstream 859128 18492626 ~ 18520287 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other upstream 143550 19596432 ~ 19657724 (-)
G114715 NA other upstream 713913 20166795 ~ 20177758 (-)
G114793 NA other upstream 989083 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 1183243 20636125 ~ 20650937 (-)
G114901 NA other upstream 1199095 20651977 ~ 20653574 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G338406 NA non-coding CI01000120 null 796736 ~ 797363 (+)
striped catfish (Pangasianodon hypophthalmus) G324799 NA non-coding NC_047616.1 CM018562.1 1592483 ~ 1619873 (+)