G114663 (cldn12,LOC107682396,LOC107686255)


Basic Information

Item Value
gene id G114663
gene name cldn12,LOC107682396,LOC107686255
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20101044 ~ 20104270 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU169265
ATTAGTAGCCTATACACTgattatgaaaaaacaaaaacaattaacattttgcaataaAGCTCTGCAAAAACAGGCAAGTTTAAGTTGAtttgtgcaaaaatgttatAGGCATTATAAAAGGAGCTTTGTTTTTAAGACATTAGTGTTTACTCTCATTTTAACAATGAATTAAGTGACTATGTAACAGTAAACTAACATACTACTAGAGCATGTAATATTCAAATGCTCGAGTTACACTGCAATGACTTCTCTGGTGTGAcagctttaaaatgcaatacatttgcACTAAAAGAATACAGTGGAATGCAGTGCAGCGTTTCATTAATGGTTTGTTGCTCAAGTAAGGCTCATTACAAAGCATAAATCAATAAGTGGAAGTACAGTCTTAAGAGTAGTTCAGCTGCTCAAAGGCATCAGGCAGAAACAACAAGAAACAGGAGTTAAACGACAACGTTTTCTAAAACCTGCAAACCCTTCAAAGTATAAAAAAGATTATGTAATGTAAGTGTTCATGTAGTAGCTTAACAGTTtttaaactaacattaaaatagaacttaaaataaaaaattccattgcaataataataataaagtaaaaattaattctccttcacaaaacaacaaagtaaaaaaaaaaaaacatgttcaggTATTACAACAATAAGGCAACATAAAAGGCAAATATGAAACTTCATGACTTAACAGTAATACAAGTGTAAGCAATCATAAAACAGGTTGCATCGCTTTCTAGCATTTACTTGTTAGCATCACATTTAGATGTTAAGAATACATATTCATCAACAGGTTAAAACAGTGCTTAACATCAGCATTACGTTCAGTGTTACTAtcaaagatatttaaaaagcagaataaaGACATTAGGGTCATGAAAATTAGTAGAAAGTTTTTCTGTGTACATAATACGTAAACCTGTCACACTGAATTCAATGCAACATTCTCAAATTATGAAGTTtactcaaattaatttttaatgaataaaactcaTTGAGAGATAGAAGTACACAGCTAATTCTAATTCCACTTGTGTTATTGCTTTGATGACCTTTTTGGCCATTTTCAGTGTTGTAACCAAGGTACCTGCTACACTAATTATATGAAggcttttcttttctattttgttcACTTTAAATTCACTATGTCTAATTTACAATTTCCAAGTTACAGAAATGAAACACCAGTTTGATTTGAAACACCCAACTCAGTTTCAGTCAGCAAGGACAGGAATGTCAATCTCAATGCCGGACATACGTGAGCGTGTGGAATAGCGGTGCCCAGCGTACCTCTGTGAGGGGGCGTAGCTTTGAGATGGGGCGTATCCCTGAGAAGGTGCGTAGCTTTGAGAGGGAGCGTAACTATATGCCTGTGAGGCTCCCACTTCTGAGCCGTAACCGTCAGGTATAGACATCTGTGGCATGTAGACATGGGGTGGAATAGGCTGAGTGGGTGCAGGTTGAGGGTAACCCTGTGCTGGGACGAAGACGGGGGCGTCCAGAACAGCCGGAGGGAAGGCCTGGGGTGCGTATGTCACAGGAGAAGGCAAGCCGTTGGTCATGAGGGGCTGCGCGGAGAGGCTGTTGGTCATCGCAGGCACTTCAGGTAGAGGTAGCCAGAAGGGAGAAGGCAGTTTTTTACACATGCAATACCACATGAACATCAGCAGAGCAGCTAAGATCAGACCACCAGCACTACCGATGGCCACATACACCGCAAAATCTACGGCGAACAGATTATCGTAACGCTCGTTGAGGTTACGAGTGTGAAACAGGAACCAGACGGCGGGCGGCATAGCGATGGCCCCGCCTAGAAACAGAAGCATCCCggccactagatggcagccTGAGCTGTTGACCAAGCAGCGGGAGTTCTTGATGTCGTCAGGTGTTTTGGAGCAGCAAGCAGTTTTACACATGCCAGTGAGACAGAGCAGAAGAGCCAAGCTGGAAAAAAAACCTACCAGTGGGTAAACAGAACTGCAGCAGTCTGAGGTCAAGCTGGTCTACTTTTGCGTACCAGTCTGAATCAAAGTAATAGCAACCCGAAGAACCATCACGCAGCACACACTTGGTCCACAGGCCGTCGTACACAGTCACGTTTTTGGCATTGCGGTTGAAGGTGAGCAGGCGGGTGGTTCTCCACTGAGGAATAAGTGTGGCGACGGTCAGACCGGCCACTGACAGAATTGCGATGATGAAGGCGAAAGCATTGGTGGCATGAATGTCACGACAAGACATGGCTGGAGACAGGAAAAACT

Function

symbol description
cldn12 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; gut; heart; and pleuroperitoneal region. Orthologous to human CLDN12 (claudin 12).

NR:

description
PREDICTED: claudin-12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169265 True 2271 lncRNA 0.41 2 20101044 20104270

Neighbor

gene id symbol gene type direction distance location
mrpl32 mrpl32,LOC107592435,LOC107666771,LOC107686307,LOC107714338,LOC107735708,LOC107580730 coding downstream 59683 20039947 ~ 20041361 (-)
ccdc127a ccdc127a,LOC107686768,LOC107719164,LOC107556965,LOC107592531 coding downstream 61857 20036348 ~ 20039187 (-)
rnf144b rnf144b,LOC107592436,LOC107686312,LOC107556966,LOC107714339 coding downstream 74039 20022244 ~ 20027005 (-)
sqlea sqlea,sqle,LOC107666801,LOC107556968,LOC107714342,LOC107686341,LOC107592438 coding downstream 80812 20011295 ~ 20020232 (-)
si:dkey-122a22.2 si:dkey-122a22.2,LOC107719144,LOC107666836,LOC107592440,LOC107686774,LOC107556959 coding downstream 214381 19865726 ~ 19886663 (-)
dbf4 LOC107666861,LOC107719134,LOC107592429,LOC107686229,LOC107714332,LOC107592324 coding upstream 24773 20129043 ~ 20133941 (-)
rundc3b rundc3b,LOC107666772,LOC107686653,LOC107719153 coding upstream 35142 20139412 ~ 20154648 (-)
polr3glb polr3gl,polr3glb,LOC107666760,LOC107714326,LOC107592290,LOC107686116 coding upstream 134862 20239132 ~ 20243565 (-)
si:ch211-135n15.2 LOC107719151,LOC107592495,LOC107666737,LOC107714311,LOC107686628,LOC107592633 coding upstream 156565 20260835 ~ 20264890 (-)
dpy19l1l dpy19l1l,LOC107666881,LOC107719125,LOC107592414,LOC107737812,LOC107686065,LOC107592262 coding upstream 201548 20305818 ~ 20313239 (-)
G114626 LOC107714343,LOC107666800,LOC107592439,LOC107719142 non-coding downstream 129087 19959867 ~ 19971957 (-)
G114611 NA non-coding downstream 381108 19719186 ~ 19719936 (-)
G114608 NA non-coding downstream 407651 19693138 ~ 19693393 (-)
G114607 NA non-coding downstream 417114 19683622 ~ 19683930 (-)
G114539 rims2,LOC107556969,LOC107592505 non-coding downstream 457554 19602438 ~ 19643490 (-)
G114718 NA non-coding upstream 69893 20174163 ~ 20244153 (-)
G114741 NA non-coding upstream 111833 20216103 ~ 20217581 (-)
G114747 NA non-coding upstream 140751 20245021 ~ 20245239 (-)
G114768 NA non-coding upstream 198713 20302983 ~ 20305444 (-)
G114771 NA non-coding upstream 237807 20342077 ~ 20409610 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other downstream 443320 19596432 ~ 19657724 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other downstream 679950 19416962 ~ 19421094 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 1279934 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 1402637 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 1429770 18669607 ~ 18671274 (-)
G114715 NA other upstream 62525 20166795 ~ 20177758 (-)
G114793 NA other upstream 337695 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 531855 20636125 ~ 20650937 (-)
G114901 NA other upstream 547707 20651977 ~ 20653574 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other upstream 908337 21012607 ~ 21017105 (-)

Expression


Co-expression Network