G115020 (gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814)


Basic Information

Item Value
gene id G115020
gene name gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21167994 ~ 21169353 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU169826
CACCATGTTTATTAGACACCAAACTCTCTGGACaatcagagtttttaaaaacacttcgtTGCGAAGCATACGCAGAGTTTACACAgagtgaaaacaaaacaaattaaatgagaaCTCCACACTGGAATCAAAAAGCACCACAGTGTCATCGTGTTGTGATCACATCCCCCGGTGTATAACACATTTACCCACACGCGTGTGAGTTTGATCTCGTTTTCTCTTTGAGAAGGAGTGTTGGCCTGCTCCTCACGTGGAAATCAAAGAAACGGAGAACAAGGACCCCGCACACGGGGCCGGTCTGAAATCAAAATAGCAATGTATCGGTATCCAAACATAGTTTCAAAACGAGTAAACAAAAAGTGTGACCCGTTGCCTGATCTAAAGGAGGACTGCAGACCAGCAGCCCGAGCGCATCTACATTGTAAACAAAGCAGTTGAGCAGTTGTTTGCTACTGACACACAGTGCTGAACTCCAGCAAACCAAAACACGATGCACCATTCTAGGACAAACCAACCAGGGGCCGGTTAAtgctataataaaatgcatcgcTATAGACCACTAGATTTTCGCatcacatttgcatttcaatCCAAACACTGAGATTTAAAAACGGGCGAATAAGGTAGGGTCACGTCGCAAAAGAGTCCAAATACAGAACGTTTCCATCTCGGCGATATacaataggaaaaaaaaaagaaaaaggttgtGATATCAAAGTTAGTAAAACCGACGTATGACAATGAGCTCGGAAAACGTCGGGACGTTCATGCATCCGCGGGCTCGCCGAGTCAGTCTACAGATTTGGAGATGTCGTGCTCCGTTGGTTCCGAGGAAAACTGAAGCCGTCTGACCGCCTCCTTGATCAGGTTCCCCGACAAAATGAGTTCCTGGAGGAGCTGGTGCGGATCGTCCTCGTCGATTTTCTTTCGGTTCCAAGAGGATCTGAAATGGTCCCATTCCTGATCGCTGGATCCGGGCGGGTTGTACGGACTGGCCCGGCTGGTGCGTAAACTCCGGCTGCGGAGACGGATGCACCGCTGAGCGCCCGCCGCGCCGCTGCCGCTGCTGTTGTTGCCGTTAACGTTAGGTCTGCCGTTCGCGAGACCGTGCAGACGTGACATCGCCTTCTGGCTCGAGCTATTGTTGTGAAGCTGCAGCGCCTCGCCGATTTTCGACACGAGCGCGTCCACTTCCTTAGAATCCACCGTCACCGACTGTTCCAAAAAGATATAGTTCTCCTTTCGACAGGGCATTTTCAATATAGCTCCAGATAACAAATATCCAGTCttgaagtttgtttttattcaaatagatGGGACCGTTTAGCCGGCGTCCGCCACGCTGCCCAACAGAAACAGC

Function

symbol description
gbp Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Is expressed in gill. Orthologous to several human genes including FRAT1 (FRAT regulator of WNT signaling pathway 1).

NR:

description
PREDICTED: GSK-3-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169826 True 1360 lncRNA 0.48 1 21167994 21169353

Neighbor

gene id symbol gene type direction distance location
kcnv1 kcnv1,si:dkey-201i6.2,LOC107717377,LOC107666889,LOC107668317,LOC107713815 coding upstream 10945 21147757 ~ 21157049 (+)
ptpn23a ptpn23a,ptpn23,LOC107666802,LOC107717372,LOC107668297 coding upstream 50304 21107087 ~ 21117690 (+)
cmtm6 LOC107717369,LOC107600546,LOC107666873,LOC107668282,LOC107713799 coding upstream 383553 20778080 ~ 20784441 (+)
cmtm7 cmtm7,LOC107666776,LOC107717357,LOC107668286,LOC107600545,LOC107592881,LOC107713818 coding upstream 393616 20770464 ~ 20774378 (+)
LOC122361050 LOC107717367,LOC107666876 coding upstream 403647 20759368 ~ 20764347 (+)
si:dkey-22o22.2 si:dkey-22o22.2,LOC107666790,LOC107717379,LOC107668308,LOC107592533,LOC107713796,LOC107600533,LOC108437325,LOC108272818 coding downstream 41499 21210852 ~ 21314454 (+)
ndufaf6 ndufaf6,LOC107717382,LOC107591959 coding downstream 177304 21346657 ~ 21354616 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 coding downstream 195986 21365339 ~ 21378842 (+)
LOC122360960 NA coding downstream 223489 21392842 ~ 21405824 (+)
si:dkey-29b11.3 LOC107730210,LOC107600552,LOC107668293,LOC107713830,LOC107567766,LOC107668280 coding downstream 482155 21651508 ~ 21654059 (+)
G114983 NA non-coding upstream 25964 21141042 ~ 21142030 (+)
trnae-cuc_37 NA non-coding upstream 29042 21138881 ~ 21138952 (+)
LOC122360615 scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836 non-coding upstream 35889 21129128 ~ 21132105 (+)
G114978 NA non-coding upstream 47462 21118149 ~ 21120532 (+)
LOC122360417 NA non-coding upstream 238553 20928702 ~ 20929441 (+)
G115074 NA non-coding downstream 221428 21390781 ~ 21391162 (+)
G115134 NA non-coding downstream 524141 21693494 ~ 21694544 (+)
G115157 NA non-coding downstream 658863 21828216 ~ 21829531 (+)
G115200 NA non-coding downstream 827657 21997010 ~ 22001617 (+)
G115288 NA non-coding downstream 1357804 22527157 ~ 22530262 (+)
siglec15l NA other upstream 397602 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 863310 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 940917 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 1520188 19643829 ~ 19647806 (+)
G114382 NA other upstream 1839231 19327104 ~ 19328763 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 680636 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 714556 21883909 ~ 21921531 (+)
G115193 NA other downstream 807764 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 1740182 22909535 ~ 22915477 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 1795216 22964569 ~ 22975774 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_00251025_00251471 GBP coding CI01000016 null 250218 ~ 251486 (-)
rainbow trout (Oncorhynchus mykiss) G131279 LOC106605477 non-coding NC_048566.1 CM023220.2 30557566 ~ 30572768 (+)