G115042 (si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533)


Basic Information

Item Value
gene id G115042
gene name si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21283464 ~ 21314746 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU169853
GAAGGGAAACTGAAAAGGTCATTTACGTTCACATCAGAGAGTTTAAAAATGCTGGAGAGCTCGTGGAAATTATGTACgtgataatataaaaaaactgagacGGGGAGTAAACTAGAGATCACGAGGCAATCGCAAACAAtactgcaaaacaaacacaaaacagcttGCGATCGCTGCGAGTCACCGCTGGGTGGCGGTAAAACCACACAAAGGAAAGTCGGTGACATTGAGGCGTGAAATTAATGTGGGATGAGGAAACTACACGACAAAATAACCACGCTCTCATGGTTGCTCAaggaaaacagttcatttattaaaatccatatacaaaaaggaaaatgttaaGGCCCTAGAaaaagtatttctgtatttacatCATTTACATGGTTCAACGAGCAGCACAGGTCTGTGATGGGCTGAAAGGAACTTTTCAAGTCAACTATAAGCCACTTTGGCAATGACCTCGTGTTCTTGTTAGAAGGTTTACAAGCGGCACGGAGTGACATTGCCTGCACCTTTCCAGAAAAAGAGCAGTGGCCATGCGTCTTCAACTCAATTTATGTTTCTGTATAGGTTTTGCTGAGCATTTAGTAGAGGACTAAcctaactgaaaaaaaacaaacaatcttaTGGCTCATTGTTCTTACAAAATGCATCAGCCTGCACATTTTTAGCAGACTAATATTCATtttcacaacaataaaaatagaacTATACAGATCCTTTGTAATTATATTGCGATTGAAAATATCCTTACGTTTTTTAATGATTGTATTTGCGCTGTGTCTGGCCacatttgaacttttaaaacaGACTTTGACACAGTGGAGTTTCATCTTCGGCTACTCAATACACGGTACATTCATCTGGCGTGAGACACGTTTCAGCACACCAGCCTCAGAGATGATTGGCATCACACACTACCTCCCTCGtatgaaaaagacaaagaaagaaagacaaaaaaaccccGACACAATGAATATTCATGGCGGAATGCAGATTTATACCACCACTGACCGAAAGTAATGTAACTTATGCTGTTTTTGCACGAGCGGAGTTGTGATTCATTGGCACATCAGTCACCTATGAAGTCTTTCGGTGTCTTCATGACCCTCTTTTGGCAAATTTATGCTTCAGAGTTAAAATTCAGAAGTGGGCGTCCATTACTAGTGCAGCTGGGTCCATTAAAACAAGAGTTTTGGTCAAGTGCAGATTTCTAAAACGTCAGGCCCTGATCAGTAAAATGCTGGGAATAATGCTGCGCTCCATTCAAAGGCAGATGCGGGATCTATTTCATTTCAACCGTGTTTTGTGATCTGATTCTCCGTGACATAAAGAACCTAATGTGTCTGCTGGTGTATGATGATCCGGAGAAGATCGTTTAGTGTTTTACACCCGTCACTGCAAACTGAACAGATTTCACCAGTGTGTAAATTTATCTCAGTGATGcagtgaatgtttatttttaactggGCATTAATTAAAAGCAGGGTTCCCAAATATTCGGACTATTTTTTCTATGTAATGTACATTAGCTTTTCagtaatttactgtaataactaaagacattttaattacttttttaaaacagttttttaatttatataatttaattaattattttctaaaacctAATATATacgttaacattttaatttaataaaaatttttaaagttcCCGTTTACGTAAAAAAaaggggtcagtaagatttatttatttatttttttattctttttattattatatatataatacattaaatagatGAAAATGATGGTAAAGTctcattaaattgtttaaaagctattctttttaatttcctttcatcaaaaaaagtctagaaattcagctttgccatcaaaggaataaatgacattttttcaaaaatacactaaaatataaaaagtagcAACCTTACAATAATAacgttttactgtatttttaaacaacaacaaactaaaTCTTACCGATCCCAGACTTTTGTCAAAAATGTTCCTCTCGAGCTTCTAAGATAAAAATCTCACATAAAGTGGAAAGCACGTTCCCAGAAAGAAAGCTGGAATTTTCCAAGTGGCATGAAGCGCAGCATTACTCATGTGTGTTCACTAAAACATACCTTGCAGTGACACGCATACCATCCTGATGATTCGCTGGCTTTGTTCCCTAtcagagcaaaaataaatacagtacatttcatatatttcactcaataaataaatcaaatcagtcCTGGAACCTCAGCTGCCCCTCGCCCCCTTAAAGCTGTGCGACTGTATCACGAATCGACACGTTTTCGAACCGGAACCCTATAAAGGCTATAAAACACTAACACAAAAATCGAACGCTGTGTCTGAAGTGGTCcagttattgttgttgttcctGGCTTTGGCTGTGCACCGTGTCCATGTAAGGGACGGCCAGCTCCGGTCGGCGATACAGCTCGCTGAGGCCTTCGAACTTGGAGCCCCAGCGCCGCAGGGAGTCGTAGCTGAAGGCCTCCTCCGAAATGGCCGAACCCAGAGAGCTGAGACTGCCCGCGCTGGAGCCCATGCCCTCGATGCAGTACACGTGGTAGGTGTCCATTGGGAACGCCAGGCTGTCGTTGTCCGCCTCCCAGATGATGCGCGACACGTAGCTCTTGAAGTCCATGGAGCAGTGGCCTCCGCAGCTGGGGTTGTGGTGGTAGGGCAGGGTGGCTCCGTTGGTGATGTTCCCGCAGGGATGGACTTCCTCCTGAGATCCCTGGGACGACTTGATGAGGGGGGCGGTGGTGCAGGAGGAGGACTGGGACAAGCTGGAACACAGCGGCCTCTTCAGCTCGGTGATGTCATAGGCGTTCTGGTGGACACACGGGACACGATTTAAAGAATTGAATTAGAAAATGAATGCAATGTACGAGGTCATGCGACCAAGGGCTtaggtttgtttttgaaagatgggACATAAGAGAACCACAGACCACgttttttaatgttagtgtTTTTGACAGAAAATAATTAGGCTACACAGTTTTAAATTTTGACGTTATAGCAGCATCAGGGTGCTGGATGTCTTAATCTCGCCTCAGAGCTTCAATTATGGATTTTTGGAAATGAAAGTGATTggaaacatcctgcaaagtttgaaatctgaaagtgcaccgtgtataacgttattaaaaaaagagtcgACCATGCATCACTGAAACGAGTTTTTCAAATGAGttccaagccgtttcatgtagaggttaaaatgaaacattagagCATTGCCCGctcacttgttggtcttttcactttagattcattctttgccatTAAGTGTCTTTGCattaactgctttaaataaaaaacaaccaatcactggagggatttgaacgaatcgtttgggatTAATAGATGCATATTCTAAGaagagaaaagtgttttttagaCCTTGCAGGTcgacctgttGGGGGAAACA

Function

symbol description
si:dkey-22o22.2 Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction.

NR:

description
PREDICTED: uncharacterized protein LOC106607957

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169853 True 3442 lncRNA 0.40 2 21283464 21314746

Neighbor

gene id symbol gene type direction distance location
LOC122361118 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 coding downstream 114060 21167981 ~ 21169404 (-)
dek dek,LOC107600508,LOC107717375,LOC107592846,LOC107666821 coding downstream 137387 21139170 ~ 21146077 (-)
LOC122360614 scap,LOC107600505,LOC107717374,LOC107591983,LOC107668298,LOC107713836,LOC107666822 coding downstream 144983 21120769 ~ 21138481 (-)
LOC122360714 NA coding downstream 178247 21102727 ~ 21105217 (-)
LOC122360412 nek11,LOC107666729 coding downstream 180996 21056300 ~ 21102468 (-)
ccne2 ccne2,LOC107717358,LOC107666792,LOC107600548 coding upstream 1033 21315779 ~ 21321087 (-)
tp53inp1 tp53inp1,LOC107666795,LOC107717380,LOC107600511,LOC107591975,LOC107668322 coding upstream 8165 21322911 ~ 21329991 (-)
nagpa nagpa,LOC107591935,LOC107668288,LOC107666791,LOC107717356,LOC107600512,LOC107713811 coding upstream 18904 21333650 ~ 21346600 (-)
LOC122360424 LOC107666780,LOC107717381,LOC107600549,LOC107713810,LOC107591947,LOC107668291,LOC101885642 coding upstream 46047 21360793 ~ 21365201 (-)
cfap418 LOC107666820,LOC107668311,LOC107592823,LOC107600550,LOC107591919 coding upstream 90517 21405263 ~ 21408968 (-)
G114997 NA non-coding downstream 162880 21118149 ~ 21120584 (-)
G114947 NA non-coding downstream 448229 20781803 ~ 20835235 (-)
G114943 NA non-coding downstream 514377 20768744 ~ 20769087 (-)
G114924 NA non-coding downstream 557793 20724171 ~ 20725671 (-)
G114908 NA non-coding downstream 603243 20677054 ~ 20680221 (-)
G115051 NA non-coding upstream 16266 21331012 ~ 21331358 (-)
G115098 NA non-coding upstream 74069 21388815 ~ 21389147 (-)
G115155 NA non-coding upstream 510452 21825198 ~ 21825437 (-)
G115170 NA non-coding upstream 559080 21873826 ~ 21874051 (-)
G115262 NA non-coding upstream 915494 22230240 ~ 22237066 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other downstream 266359 21012607 ~ 21017105 (-)
G114901 NA other downstream 629890 20651977 ~ 20653574 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other downstream 632527 20636125 ~ 20650937 (-)
G114793 NA other downstream 831014 20441965 ~ 20452450 (-)
G114715 NA other downstream 1105706 20166795 ~ 20177758 (-)
G115093 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 other upstream 61144 21375890 ~ 21378836 (-)
mettl6 mettl6,LOC107600537 other upstream 95213 21409959 ~ 21411772 (-)
trnae-cuc_38 NA other upstream 95214 21409960 ~ 21410031 (-)
G115116 NA other upstream 245475 21560221 ~ 21561216 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 291212 21605958 ~ 21614203 (-)

Expression


Co-expression Network