cdc42se1 (cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866)


Basic Information

Item Value
gene id cdc42se1
gene name cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22892102 ~ 22901187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170567
AAACACAGAGTCATTTCCACCCTCAGCTTTCCACACAAGAGTTGCTTCACTCCAGCCGCTCACTGGGGCTCTCGGTTTCACCAAAGATTCGTCTGTAACCGCTCTGCCTCGCATAAACCCCACAGTCCAACAGGATCAACTGGAAATCGGGGACCTAGAATAACTGAGGGAATAAGgggtcttgtgtgtgtgtgtgtgtctaaatatatatatacttaaagcAGAGACCTCAGCATTCTCTCAGTGATCAGGACAGAGGTTTTTGGACGAGCCACGGCTTATATCACTGAGTGTTGAGGATTAGATTCTCTCTCTATCTTGTCTCTAAACGGCCTGCAGGGTGgcgagagagaggggggaaccCAACCGGTGCATGCCGGAGATGAGTGCGTTCTGGCATAAGATCGGCTGCTGCGTGGTAGCCAAACCTCCTCCGaaaaagaaacgGAGGAGAATTGACCGCAGCATGATTGGAGAACCCACAAACTTCGTTCATCTGACACACATAGGCTCTGGCGAAATGGCAGATGGCATGCAGCCGTCTGGCCCAATGCAGGAACAAATGAGATCCAAAGTGCCTCACGCTAATGGACGAAACAGCTTGTTATAGCCTCTTCACCAGTTTTTACCCCCCCCCCCCCATAAAGCTCCATAAAGTGTCCACAGCAGAACGTGTCCGGCTAGCAGCACCGCACCAATGTAGGAGGATGTAAAGACCGCATCTCTATCGCAAAACACGACAACCTCCTTGCTGCAGCTACCGACTTGGACGCCACCtctgcaggttttttttaatcttttggaTCTTCTGGAATGTCTCAGTGGAGACGATTGTGCCCTTCTTTTACTCTAAGACTGTTATTACATTTGGACCGGAGTGTATGCGAACGCCTGACAAAGAGTGTGAATGTGCGACGTGTGCGTTTGACACACTGGCTGCGCTTGCTGTGGAAGAGGAAAGGCTCTTATCACTTTAACACAGGGGACTATTTGACTGCCTTCCCAAAGTTATAACTGGCGTGTTTGTCATAGTCTGTCGTTGATAAGGatgtgcgcgagtgtgtgtgtttgcttttgttttgtaatgaaaatatatgtgCACCTATACCATTATAGTGTCTCCAACTGCTTGTCTTTAACAGTTGCACAAATGAGTGTATTATACAAAGCCCTCTGGTATGTGTATAGTAGATGAATATAGTATGAAAAAtggcttcttcttctttttttttttttctctacattAACACATAATGCATAATGGCCTTTGAAACTGGTTTTAAGGAATAAAAATACTCATCCACCAAGTCATTTCAAACCCATACGCTCTTAAAAGGTGCTTCAAGATGCTGTAGAAGAACGTTTATGTCCAAGTGGTTCCATAAAGAAACATCCGAAGAGCATTTGTTATTTGTGACCAAAGAACTTCTTctgattataaaaaggtaagaatgAGATgattctttgtggaaccaaaaaggGTGCTTTTATGGCattgctgtgaagaacctttttaagCACCTTTTTATTGCCTTTTTTGGTATTTATTCGTACAACATAGTGATATACTGTATAagctataaaacataaaaaggacACCATCATGGTGTGTAATGTTTTCAGGATTTGCTTCATGTGAGGaacagaataaatgaatgtCACTAATCACTGATAATTGTCCCCTCGAGTGAACTTTTAACTTGAGAGAAGCAATAATATGGCTTCAGACCATTTGGATTTttgaggacttttttttttttttttttttttttttaataattattttagggTCCAACAGGTAGGCACTCATAAATCAAcatgaatttttgtttttttaatgacgaggggtgagtaaatatttttttttttttaggtaaattATTCCTTTTAATCGTTAAGTATTAGAAAAGGCCATTATCTGTTAATCTGAGTGGAGACTTTGACCGGCAGCGAGCCACTGCCCTTTGTCATTTAAACATCACACTTAGTGTCACTTTCACACATCAAGCTCCACCCCACACCGCCTCAAACACACGCTCTCTGTTTCCAATCCTCACATGGCACCATGATTAAATCACTGattctcacacatacacacactttgtATACTTTTTACTTTgctctgtactttttttttttttttttttaaatgcagctcgATGTGGCACAGAATTGGGCTGAAAtgttaaacaatgttttttgcttgtaattgtgatgttttatttcaaatgcattgcTTTGCGAGATCCCAGACTGTAATTTACTTTGTGTTTGCTGTAATTTGTTAGGACATGTCATAGGAAAATATGTTGAGATTGTGCATGTTGCTTTAGAAATCCAATGTTTTAGAGTATTTTTAGTGGACTTGCATTTCATTCTTAGCTGACGGTATAGAGAAACGTGCATCTCCTCCAAAGACCTCGACAGCTCCCTTAATTTAATTCTACATGTGGCTTGCAGATTTTCTCACTTTCTGGTTTTATGTGACTGTTTggccatttttttaagtttttttttttgcaaaagcacttttttgtctttactacttttccttttattctatacttttttttttttcttctttcttttttaaagcatcTGTTAGTCCaaattattgttttggtttaaatGGGAGCAGTAATAGTGTTCTGTTCATATGGCATGGTGTTATGTTGATGAATCCTCTTGTTGTGTTTGGTTTGTAACAATACAGTTGTACAAAGA
>XM_043261867.1
TTTCCTCATATTAATGGGGGAAACTTCAACCACACCTCAGCGATCTGGGAAACACAGAGTCATTTCCACCCTCAGCTTTCCACACAAGAGTTGCTTCACTCCAGCCGCTCACTGGGGCTCTCGGTTTCACCAAAGATTCGTCTGTAACCGCTCTGCCTCGCATAAACCCCACAGTCCAACAGGATCAACTGGAAATCGGGGACCTAGAATAACTGAGGGAATAAGgggtcttgtgtgtgtgtgtgtgtctaaatatatatatacttaaagcAGAGACCTCAGCATTCTCTCAGTGATCAGGACAGAGGTTTTTGGACGAGCCACGGCTTATATCACTGAGTGTTGAGGATTAGATTCTCTCTCTATCTTGTCTCTAAACGGCCTGCAGGGTGgcgagagagaggggggaaccCAACCGGTGCATGCCGGAGATGAGTGCGTTCTGGCATAAGATCGGCTGCTGCGTGGTAGCCAAACCTCCTCCGaaaaagaaacgGAGGAGAATTGACCGCAGCATGATTGGAGAACCCACAAACTTCGTTCATCTGACACACATAGGCTCTGGCGAAATGGCAGATGGCATGCAGCCGTCTGGCCCAATGCAGGAACAAATGAGATCCAAAGTGCCTCACGCTAATGGACGAAACAGCTTGTTATAGCCTCTTCACCAGTTTTTACCCCCCCCCCCCCATAAAGCTCCATAAAGTGTCCACAGCAGAACGTGTCCGGCTAGCAGCACCGCACCAATGTAGGAGGATGTAAAGACCGCATCTCTATCGCAAAACACGACAACCTCCTTGCTGCAGCTACCGACTTGGACGCCACCtctgcaggttttttttaatcttttggaTCTTCTGGAATGTCTCAGTGGAGACGATTGTGCCCTTCTTTTACTCTAAGACTGTTATTACATTTGGACCGGAGTGTATGCGAACGCCTGACAAAGAGTGTGAATGTGCGACGTGTGCGTTTGACACACTGGCTGCGCTTGCTGTGGAAGAGGAAAGGCTCTTATCACTTTAACACAGGGGACTATTTGACTGCCTTCCCAAAGTTATAACTGGCGTGTTTGTCATAGTCTGTCGTTGATAAGGatgtgcgcgagtgtgtgtgtttgcttttgttttgtaatgaaaatatatgtgCACCTATACCATTATAGTGTCTCCAACTGCTTGTCTTTAACAGTTGCACAAATGAGTGTATTATACAAAGCCCTCTGGTATGTGTATAGTAGATGAATATAGTATGAAAAAtggcttcttcttctttttttttttttctctacattAACACATAATGCATAATGGCCTTTGAAACTGGTTTTAAGGAATAAAAATACTCATCCACCAAGTCATTTCAAACCCATACGCTCTTAAAAGGTGCTTCAAGATGCTGTAGAAGAACGTTTATGTCCAAGTGGTTCCATAAAGAAACATCCGAAGAGCATTTGTTATTTGTGACCAAAGAACTTCTTctgattataaaaaggtaagaatgAGATgattctttgtggaaccaaaaaggGTGCTTTTATGGCattgctgtgaagaacctttttaagCACCTTTTTATTGCCTTTTTTGGTATTTATTCGTACAACATAGTGATATACTGTATAagctataaaacataaaaaggacACCATCATGGTGTGTAATGTTTTCAGGATTTGCTTCATGTGAGGaacagaataaatgaatgtCACTAATCACTGATAATTGTCCCCTCGAGTGAACTTTTAACTTGAGAGAAGCAATAATATGGCTTCAGACCATTTGGATTTttgaggacttttttttttttttttttttttttttaataattattttagggTCCAACAGGTAGGCACTCATAAATCAAcatgaatttttgtttttttaatgacgaggggtgagtaaatatttttttttttttaggtaaattATTCCTTTTAATCGTTAAGTATTAGAAAAGGCCATTATCTGTTAATCTGAGTGGAGACTTTGACCGGCAGCGAGCCACTGCCCTTTGTCATTTAAACATCACACTTAGTGTCACTTTCACACATCAAGCTCCACCCCACACCGCCTCAAACACACGCTCTCTGTTTCCAATCCTCACATGGCACCATGATTAAATCACTGattctcacacatacacacactttgtATACTTTTTACTTTgctctgtactttttttttttttttttttaaatgcagctcgATGTGGCACAGAATTGGGCTGAAAtgttaaacaatgttttttgcttgtaattgtgatgttttatttcaaatgcattgcTTTGCGAGATCCCAGACTGTAATTTACTTTGTGTTTGCTGTAATTTGTTAGGACATGTCATAGGAAAATATGTTGAGATTGTGCATGTTGCTTTAGAAATCCAATGTTTTAGAGTATTTTTAGTGGACTTGCATTTCATTCTTAGCTGACGGTATAGAGAAACGTGCATCTCCTCCAAAGACCTCGACAGCTCCCTTAATTTAATTCTACATGTGGCTTGCAGATTTTCTCACTTTCTGGTTTTATGTGACTGTTTggccatttttttaagtttttttttttgcaaaagcacttttttgtctttactacttttccttttattctatacttttttttttttcttctttcttttttaaagcatcTGTTAGTCCaaattattgttttggtttaaatGGGAGCAGTAATAGTGTTCTGTTCATATGGCATGGTGTTATGTTGATGAATCCTCTTGTTGTGTTTGGTTTGTAACAATACAGTTGTACAAAGAGcaa

Function

symbol description
cdc42se1 Acts upstream of or within midbrain-hindbrain boundary morphogenesis. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be active in plasma membrane. Orthologous to human CDC42SE1 (CDC42 small effector 1).

NR:

description
PREDICTED: CDC42 small effector protein 1

GO:

id name namespace
GO:0021555 midbrain-hindbrain boundary morphogenesis biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170567 False 2724 lncRNA 0.40 5 22892106 22901138
XM_043261867.1 True 2777 mRNA 0.40 5 22892102 22901187

Neighbor

gene id symbol gene type direction distance location
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding downstream 77007 22812569 ~ 22815095 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding downstream 95082 22779235 ~ 22797020 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding downstream 124814 22763204 ~ 22767288 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715 coding downstream 368352 22419870 ~ 22523750 (-)
snrnp48 LOC107679653,LOC107551179,LOC107756216,LOC107600666 coding downstream 541059 22347650 ~ 22351043 (-)
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding upstream 14780 22915967 ~ 22929917 (-)
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding upstream 76738 22977925 ~ 22982891 (-)
LOC122360867 phf20l1,LOC107587800,LOC107704904 coding upstream 163558 23064745 ~ 23072189 (-)
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding upstream 180042 23081229 ~ 23089594 (-)
LOC122360196 NA coding upstream 188770 23089957 ~ 23096651 (-)
G115536 bnipl,LOC107755792,LOC107556108,LOC107755808 non-coding downstream 4101 22885715 ~ 22888001 (-)
G115496 NA non-coding downstream 118070 22773766 ~ 22774032 (-)
G115335 NA non-coding downstream 208464 22683427 ~ 22683638 (-)
G115262 NA non-coding downstream 655036 22230240 ~ 22237066 (-)
G115170 NA non-coding downstream 1018051 21873826 ~ 21874051 (-)
G115548 LOC107704994,LOC107705391,LOC107588482,LOC107755744,LOC107700704,LOC107556105 non-coding upstream 9692 22910879 ~ 22911323 (-)
G115559 pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC107556080,LOC108437351 non-coding upstream 57497 22958684 ~ 22960933 (-)
G115579 NA non-coding upstream 95772 22996959 ~ 22997389 (-)
G115581 NA non-coding upstream 98974 23000161 ~ 23000665 (-)
G115582 NA non-coding upstream 100828 23002015 ~ 23003118 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 803010 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 923567 21964855 ~ 21968535 (-)
G115149 NA other downstream 1088298 21801475 ~ 21803804 (-)
G115141 NA other downstream 1187143 21704018 ~ 21704959 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 1277899 21605958 ~ 21614203 (-)
G115554 NA other upstream 31440 22932627 ~ 22933967 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 618621 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 681806 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 766878 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1416295 24317482 ~ 24339788 (-)

Expression


Co-expression Network