G115559 (pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC107556080,LOC108437351)


Basic Information

Item Value
gene id G115559
gene name pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC107556080,LOC108437351
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22958684 ~ 22960933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170604
ttgcttttgaatgcaTGCTCCATCACAGCAGTCAAATGctttattatatcatttcaaCTGAAGgagatttatttacattgcacattttagatttttttttttatatttcctaGTCAGGGAGACAATAGTGTAACAAAGCAACAATCACATTATGAAGATCAAATATATCCTCCACAAAGGCACAGCGACATCTGACAACAACCAACCAAATAAAAAAGAGCCATAACAGTGAGCCTTTTAGATCATTTAGAGCATTAGACATTCACATGACTTTCACAGTGCCCTCAATCTGGTTTGATTGACCTTACACAGCATTTGAGTAAATGCAATTGCTGTTGTTGATGGTCTCCACTTGATGAGAGCGAGCGATGAAGGTAACAAGCACGTTCTGGAGCATCTCGGCTCTCATCTTGCTGATCTGCAGCACCTCCTCGTGATTCACCTTCTCCTCGCGGCTGTAATCCAGAGAAACCTTGTTGGTGATGAGAGAGAGACCCAGGACCCGCAGTCCGCAATGCTTGGCTACCGTCACCTCAGGAACCGTGCTCATGCCTGAGAGGGCAACAGAGTCACTTCCCAAGATGTGCAGCATGCGTGCTTCAGCGATGGTCTCAAAGTTGGGTCCACTAACCATACAGTAGACTCCCTCATGCACAAAATTCAAGTAGCCCAACTCAGCAGTTATGTCCAAAACCAGTTTCCTCAGGTCTTTGCTGTAAGCGTCAGACATGCAAGGAAACCGAATCCCAAATCTGAGGAATAGATGAAAAAACACACCATCCTtgctataaaataacaattctgtaaTACAATATCCAGtgcctcctctctctctttttttctcccttctcTGCATACCGTTCATCATTGGGTCCGCACAGTGGGTGCTGCCCAGCAAACCCTGGCAAGTTAATATGGTCCTTAATGACCATGATGTCTCCCACTTTGAAATCCTGACAAAGACCTCCAGAGGCATTTGTTACAACAATGGTCTCTACACCCATCAGTTTGAAGATCCTCACAGGGAACGTGACCTGGAAAAAATTCCACAGAAAATACAAGCTGTTACTGCACGGAACCTCTCTGACCAA

Function

symbol description
pnp4b Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

NR:

description
PREDICTED: purine nucleoside phosphorylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170604 True 1091 lncRNA 0.44 2 22958684 22960933

Neighbor

gene id symbol gene type direction distance location
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding downstream 28767 22915967 ~ 22929917 (-)
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding downstream 143589 22812569 ~ 22815095 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding downstream 161664 22779235 ~ 22797020 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding downstream 191396 22763204 ~ 22767288 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715 coding downstream 434934 22419870 ~ 22523750 (-)
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding upstream 16992 22977925 ~ 22982891 (-)
LOC122360867 phf20l1,LOC107587800,LOC107704904 coding upstream 103812 23064745 ~ 23072189 (-)
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding upstream 120296 23081229 ~ 23089594 (-)
LOC122360196 NA coding upstream 129024 23089957 ~ 23096651 (-)
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding upstream 136334 23097267 ~ 23102702 (-)
G115548 LOC107704994,LOC107705391,LOC107588482,LOC107755744,LOC107700704,LOC107556105 non-coding downstream 47361 22910879 ~ 22911323 (-)
G115536 bnipl,LOC107755792,LOC107556108,LOC107755808 non-coding downstream 70683 22885715 ~ 22888001 (-)
G115496 NA non-coding downstream 184652 22773766 ~ 22774032 (-)
G115335 NA non-coding downstream 275046 22683427 ~ 22683638 (-)
G115262 NA non-coding downstream 721618 22230240 ~ 22237066 (-)
G115579 NA non-coding upstream 36026 22996959 ~ 22997389 (-)
G115581 NA non-coding upstream 39228 23000161 ~ 23000665 (-)
G115582 NA non-coding upstream 41082 23002015 ~ 23003118 (-)
G115583 NA non-coding upstream 43954 23004887 ~ 23005837 (-)
G115595 NA non-coding upstream 83931 23044864 ~ 23045681 (-)
G115554 NA other downstream 24717 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 57497 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 869592 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 990149 21964855 ~ 21968535 (-)
G115149 NA other downstream 1154880 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 558875 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 622060 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 707132 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1356549 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1403707 24364640 ~ 24369566 (-)

Expression


Co-expression Network