G115597 (phactr4b,LOC107587745,LOC107704841,LOC107597106)


Basic Information

Item Value
gene id G115597
gene name phactr4b,LOC107587745,LOC107704841,LOC107597106
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23046482 ~ 23048695 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170655
AGTTTGAGAGGCTGGATGGTGACTGCCAGTGGGCGGCTGCCCTGGTACTCCGGTGGTGTCTCAAACAGAAGTGAGTGGGCACGCTGGGAGCCATCTGGGTGTGGGAGAGCAGGTCCTGGGCTACTGAGCGCCCTCTGGATCATGATGTGTAAGGGAACAGGAGCTTGACGGGCTGGCGGTTCCTCCGGAGGGCTGGGAGGGTCAAAGTGGACAGGAAGTGGCTGGGGTAGGGGGTAGGGATAGGAGTGTTGGTGGAGGAGATGATGGGTGTGGGCCCGTGGTGGGGAAGGGGGAATGTGTGTGGGGAGAGGTGGTGATGGGGGAGGAGGAGGCAGCTGGTAACCCCCGGGGATGTTGGCCCTCATGTCCTCTGACAGGATGGAGGGTAGGGAGGAAATGGTCAGAGGGGAGTCCTCTGCATTGCGTTTGGTGACAGGCGTGGTTCTTTTTGGGGGCATAGGGGGTGAGGGCTTGGCCGGTACTAGGTTGACACCTCCTTGTGTGAGTTCAGCTGTAGTacCTGTGCGCATGCCTCCTGCCCGCCGGCAGAGGTAGACAGGCAGGGACAGGTAGACGTCATGGTCACCCTCACGCTTCCAACAGGACCAGTAGAGGGGGAAATCGCTGCCGTCACCCCCATGCAGGGTGGAGGCTGGCGGGGGACAAGAACACACAGTCCCCTGgcgtcaaacacacacacatatcttcACAAAGCAGGGACGGCTTATTCCTCTAAATGACTGGATACATCACGCCAGTGTGAAAGACGTTGGAGCTACACACAGAAGGTTTTTAAAGTCAACGTGAAATCTAAATTGACACCCATTATTGTCTTAAAGGGTTTCTCGAGCGCAAAATGAACTctgtcttcaaaaaaaaatgttttggtgtcTTAGGCCAAGTGTTATCcacttgttttatttgtgactttgtgacttcATTGTTCCCATAAATGGCAGAGATCATATTCCCAATAGAGACTTGGACTGGGAAATAGCATGTGTCATGACTTAACTAACGGACTAAAACAAATAACTGTTTGTTTTGAACATTCGTcaacattttagacatttaacaAATCTGtcaa

Function

symbol description
phactr4b Predicted to enable actin binding activity; protein phosphatase 1 binding activity; and protein phosphatase activator activity. Predicted to be involved in several processes, including enteric nervous system development; morphogenesis of embryonic epithelium; and negative regulation of integrin-mediated signaling pathway. Predicted to act upstream of or within nervous system development. Predicted to be located in lamellipodium. Is expressed in Purkinje cell. Orthologous to human PHACTR4 (phosphatase and actin regulator 4).

NR:

description
PREDICTED: phosphatase and actin regulator 4B isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170655 True 1087 lncRNA 0.53 2 23046482 23048695

Neighbor

gene id symbol gene type direction distance location
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding downstream 63591 22977925 ~ 22982891 (-)
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding downstream 116565 22915967 ~ 22929917 (-)
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding downstream 231387 22812569 ~ 22815095 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding downstream 249462 22779235 ~ 22797020 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding downstream 279194 22763204 ~ 22767288 (-)
LOC122360867 phf20l1,LOC107587800,LOC107704904 coding upstream 16050 23064745 ~ 23072189 (-)
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding upstream 32534 23081229 ~ 23089594 (-)
LOC122360196 NA coding upstream 41262 23089957 ~ 23096651 (-)
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding upstream 48572 23097267 ~ 23102702 (-)
LOC122360201 LOC107724792,LOC107552857 coding upstream 54475 23103170 ~ 23109883 (-)
G115596 NA non-coding downstream 189 23046022 ~ 23046293 (-)
G115595 NA non-coding downstream 801 23044864 ~ 23045681 (-)
G115583 NA non-coding downstream 40645 23004887 ~ 23005837 (-)
G115582 NA non-coding downstream 43364 23002015 ~ 23003118 (-)
G115581 NA non-coding downstream 45817 23000161 ~ 23000665 (-)
G115598 NA non-coding upstream 854 23049549 ~ 23049843 (-)
G115599 NA non-coding upstream 1612 23050307 ~ 23052275 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding upstream 7400 23056095 ~ 23056530 (-)
G115611 NA non-coding upstream 23564 23072259 ~ 23073450 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding upstream 25608 23074303 ~ 23077870 (-)
G115554 NA other downstream 112515 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 145295 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 957390 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1077947 21964855 ~ 21968535 (-)
G115149 NA other downstream 1242678 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 471113 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 534298 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 619370 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1268787 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1315945 24364640 ~ 24369566 (-)

Expression


Co-expression Network