G115914 (cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120)


Basic Information

Item Value
gene id G115914
gene name cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23820519 ~ 23822288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171126
TTGCATTCATAGCGCTCTTTCCAACATATAAGCATATACTTAGTGTATCGTAACAGTTATTCTTCGTAATATAGTGCAACATACAGCAAAATGTACAATCTATCCAAAAGGTGAAGCAAAATCTTTGCTAGCAGTCATCAATAAAGCTTAGGATATTTTGTTTCACAGtgtaatctatatatattttggcgTCTTTTACGCTTGGGTCAAAATGTAGGCGAGTTAGCTGTTCTGGGTGTGTTTATTATAGGTCTTATTTCACTGCTGTAAAAAGATGCTTAGAGAAACAGCACTATACATGACTAGCTGATCACAATAGCCACCTTTTCACATTTGACCTATTGAATGttcctaaaaaaaatcataattttagaCTGTTTACAAGCTAACAAACTAATAGCTAATGTCTTTCTTATAACGTTTAAAATGAAGACTTCTCCTCTTATTCtaacatgtatgtgtgtgtgtttgtgttgaagtTCATGTTAGTATACACACTGTCTTCATGTAATAACctattttcatatttctcacattttatactgctatttatttgatatgctgttttttttatgccataTGGAAACCTACTAATAAAATCTTTACACCATAGTAGCCTATTCATACAATGAACACTAacctaaatataataaatatttaacatggaTTAAAAGCTGTCAAATTGTTAATATGACTTTAAATACTATTTATGTACCGTTTCACTGCTTGTCTACGCTTTCAGAAATAGTATCTGGGTTACTATCCCTAACAGCCCGATCTTTGCTGTTTTTGCAAACGCCGGAACCATATTCATTTCTTTGGCCCTGAGCTTTTCCCAAATTACGTTCCCTGCATGCTTTGCAACATGCTAACAATCCTAACAATGCGCACCCTTCTCTCCTCAGCTCTTTGCAGCGCAGGGCGTATAGAAGCGGGTTTACGCACGAGTTGACCAGGCAGAGTGTGCTACAAAAAGCGAACATTCGCTGTTGTTTGTTCGTAAGGGTCACTGTGACATCCACCATCATAAAGGACAGGACAGGCAGCCAACAAACAGCAAGGATTAGGAGGATCAGGCTGAAGGTGCGCGCGAGCTGAATGTCCATTCGCATTCGAGCCTGTCCTTTCACGCTCTGCTTCCCCGACTTTGGTCCACCCATAGCTGCTTCATGCCGATTCGCTTTCCACAGGATAAGAAAGTAAGCCACTATGATAAGAAAGAGCACTACAAGTTGTAGGACCGTCCAGAAGGCCAGGTAGTGATGATCCACATGAGGGAAGAGGTAGGAGCAAGGGGGATCAAATCTGGTCGTGCACCTCCAACCCATCAGAGGCAGAAATGAAATTATAATCGTCACACACCATAATAATACAATAGCCAGCTTGGCTCTAGTGCCTGTCAGTAGCGTCTTGTAATGGGAAGCCTGGTAAATGCAG
>TU171127
tgtgtttgtgttgaagtTCATGTTAGTATACACACTGTCTTCATGTAATAACctattttcatatttctcacattttatactgctatttatttgatatgctgttttttttatgccataTGGAAACCTACTAATAAAATCTTTACACCATAGTAGCCTATTCATACAATGAACACTAacctaaatataataaatatttaacatggaTTAAAAGCTGTCAAATTGTTAATATGACTTTAAATACTATTTATGTACCGTTTCACTGCTTGTCTACGCTTTCAGAAATAGTATCTGGGTTACTATCCCTAACAGCCCGATCTTTGCTGTTTTTGCAAACGCCGGAACCATATTCATTTCTTTGGCCCTGAGCTTTTCCCAAATTACGTTCCCTGCATGCTTTGCAACATGCTAACAATCCTAACAATGCGCACCCTTCTCTCCTCAGCTCTTTGCAGCGCAGGGCGTATAGAAGCGGGTTTACGCACGAGTTGACCAGGCAGAGTGTGCTACAAAAAGCGAACATTCGCTGTTGTTTGTTCGTAAGGGTCACTGTGACATCCACCATCATAAAGGACAGGACAGGCAGCCAACAAACAGCAAGGATTAGGAGGATCAGGCTGAAGGTGCGCGCGAGCTGAATGTCCATTCGCATTCGAGCCTGTCCTTTCACGCTCTGCTTCCCCGACTTTGGTCCACCCATAGCTGCTTCATGCCGATTCGCTTTCCACAGGATAAGAAAGTAAGCCACTATGATAAGAAAGAGCACTACAAGTTGTAGGACCGTCCAGAAGGCCAGGTAGTGATGATCCACATGAGGGAAGAGGTAGGAGCAAGGGGGATCAAATCTGGTCGTGCACCTCCAACCCATCAGAGGCAGAAATGAAATTATAATCGTCACACACCATAATAATACAATAGCCAGCTTGGCTCTAGTGCCTGTCAGTAGCGTCTTGTAATGGGAAGCCTGGTAAATGCAGAGATAACGGTCCAGCGCTGTCAGCAACAGGCTTCCCACAGAGCCCGTGAACGCCATTGTGACTCCACCGAGCTTGAACAGATACGTGTTAGGGCCGTCGCTCtgactgaaaagatggaaaTCTAGAAAACTGACGGTGAAGAAACAGCTGGCAAAGGTGTCTGCCAGCGCCAAGCTGCTGATGAACAGGTACGACGGTCGTCTGCGCAGAGCGGCGGAGCTCGCAATGACCAGCAGGACCAAAACGTTCTCCAGGAACGTCACAGGGCCGGCTAGCAAGCAGATCGTGCCAATAGCTTTCTTCTCTGGTGCGGTCAGGACCATGTAACACTGT
>TU171128
TCAGCTCTTTGCAGCGCAGGGCGTATAGAAGCGGGTTTACGCACGAGTTGACCAGGCAGAGTGTGCTACAAAAAGCGAACATTCGCTGTTGTTTGTTCGTAAGGGTCACTGTGACATCCACCATCATAAAGGACAGGACAGGCAGCCAACAAACAGCAAGGATTAGGAGGATCAGGCTGAAGGTGCGCGCGAGCTGAATGTCCATTCGCATTCGAGCCTGTCCTTTCACGCTCTGCTTCCCCGACTTTGGTCCACCCATAGCTGCTTCATGCCGATTCGCTTTCCACAGGATAAGAAAGTAAGCCACTATGATAAGAAAGAGCACTACAAGTTGTAGGACCGTCCAGAAGGCCAGGTAGTGATGATCCACATGAGGGAAGAGGTAGGAGCAAGGGGGATCAAATCTGGTCGTGCACCTCCAACCCATCAGAGGCAGAAATGAAATTATAATCGTCACACACCATAATAATACAATAGCCAGCTTGGCTCTAGTGCCTGTCAGTAGCGTCTTGTAATGGGAAGCCTGGTAAATGCAGAGATAACGGTCCAGCGCTGTCAGCAACAGGCTTCCCACAGAGCCCGTGAACGCCATTGTGACTCCACCGAGCTTGAACAGATACGTGTTAGGGCCGTCGCTCtgactgaaaagatggaaaTCTAGAAAACTGACGGTGAAGAAACAGCTGGCAAAGGTGTCTGCCAGCGCCAAGCTGCTGATGAACAGGTACGACGGTCGTCTGCGCAGAGCGGCGGAGCTCGCAATGACCAGCAGGACCAAAACGTTCTCCAGGAACGTCACAGGGCCGGCTAGCAAGCAGATCGTGCCAATAGCTTTCTTCTCTGGTGCGGTCAGGACCATGTAACACTGT

Function

symbol description
cnr2 Predicted to enable cannabinoid receptor activity. Acts upstream of or within several processes, including hematopoietic stem cell differentiation; hematopoietic stem cell migration to bone marrow; and methionine metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including digestive system; gill; heart; hematopoietic system; and nervous system. Used to study anxiety disorder. Orthologous to human CNR2 (cannabinoid receptor 2).

NR:

description
PREDICTED: cannabinoid receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171126 True 1437 lncRNA 0.40 1 23820852 23822288
TU171127 False 1307 lncRNA 0.46 1 23820519 23821825
TU171128 False 869 lncRNA 0.52 1 23820519 23821387

Neighbor

gene id symbol gene type direction distance location
pnrc2 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 coding downstream 4730 23811951 ~ 23815789 (-)
dop1a LOC107587763,LOC107704948,LOC107597122,LOC107700746,LOC107716858 coding downstream 8844 23789106 ~ 23811675 (-)
snap91a snap91,LOC107704947,LOC107716855,LOC107700747,LOC107597123 coding downstream 32817 23752336 ~ 23787702 (-)
me1 me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032 coding downstream 83882 23676990 ~ 23736637 (-)
pnisr pnisr,LOC107704944,LOC107716852,LOC107700755 coding downstream 240638 23572971 ~ 23579881 (-)
utp11 utp11,utp11l coding upstream 262199 24084487 ~ 24087339 (-)
rspo1 rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686 coding upstream 312595 24134883 ~ 24154422 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding upstream 374409 24196697 ~ 24198654 (-)
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding upstream 489201 24311489 ~ 24316132 (-)
LOC122360159 hivep3,LOC107704966,LOC107732829,LOC107587744,LOC107700668,LOC107755436,LOC107597126 coding upstream 549815 24372103 ~ 24430886 (-)
G115911 NA non-coding downstream 3419 23816900 ~ 23817100 (-)
G115910 NA non-coding downstream 4362 23815897 ~ 23816157 (-)
G115669 NA non-coding downstream 492626 23326208 ~ 23327893 (-)
G115631 NA non-coding downstream 630869 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 652579 23165193 ~ 23167940 (-)
LOC122359981 NA non-coding upstream 222472 24044760 ~ 24057262 (-)
G115939 NA non-coding upstream 255343 24077631 ~ 24077867 (-)
G115954 NA non-coding upstream 365649 24187937 ~ 24188594 (-)
G116174 NA non-coding upstream 999213 24821501 ~ 24823410 (-)
G116179 rab42 non-coding upstream 1011248 24833536 ~ 24833958 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 145174 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 210678 23582993 ~ 23609841 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 296137 23519808 ~ 23524382 (-)
G115554 NA other downstream 886552 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 919332 22892102 ~ 22901187 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 495194 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 542352 24364640 ~ 24369566 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other upstream 591938 24414226 ~ 24473365 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 1842431 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 2557384 26379672 ~ 26384187 (-)

Expression


Co-expression Network