phactr4b (phactr4b,LOC107587745,LOC107597106,LOC107700669)


Basic Information

Item Value
gene id phactr4b
gene name phactr4b,LOC107587745,LOC107597106,LOC107700669
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24317482 ~ 24339788 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171232
GACGGAGGACTGGAAATCTAATCTGGCCTGGCAGGGAGATGATATCAGACATGGTGGAAGGCTACATGTTGAAATGGACAAGAGGCCTGGGCTAATGAAAGCCCCCTCTGAGGATGGGCGCAGGACTCGTCCCGAGCCGGACTGGAAGCCAACGCTTCCTCGCCACTCGTCTGTCGAAGAGGGAAGGGGAAGACAAGAGTCTGACAGCAGTCAGTACGTTCCTAACTCGGAGATTCTGAGGGACACACTGCGAGAACCTCTGCCTCCGAAGCAGTCCATCATGCCGCCCAAATGGCTGATGACATCCACCCCGGAACCTGGTGCTGACAGCTTGCCCCGCACCCCTGTCCACAACCCCGCAGCTgctttctcctcttcctctgcctcctccaactcctcctcctcatcagcTGTCAGCGCAGCTGGAAAACCACTACGAAACGTATCCTCAGCTGGCGCCAACACACAGGCCTCCAGCAGCGCTCCCCTTACCACCTCTTCAGCACCATCCTCTATGGGCAATGTCCCAGCCCAGCCCACCA
>XM_043261588.1
AACATTGGCTTGGAAAGTGGAAGGAAGCATGAGATCGACGCTAGGTGACAGGAAAGGGTTTCTTTGAAGCCGAGAGGAAAAGCGGAAGGTTTAGGAGAACCTGGATTGCTGCTGCTGTCCACTGGGGTGCACCTGGGCAGGAGCTGCAAACGGAGGCCCTTTGGGGGCTGGAGCATGGGACAGACGTTCCCTCTAGAGACTGCACCTCAAAACTCCTGCGCACACTTGGATGATGAAGGTGATCACCAGCACAGCAGCACAGGGAGCGAAGGGGGAACGGCAGGGGACGGCACCCCTCCTCCCAAGCGCAAGGGCAAGTTCTCTACCCTGGGTAAGATCTTCAAACCCTGGAAGTGGAGGAAGAAGAAAAGCAGCGAGAAGTTTAAGGAAACTTCAGAAGTTCTGGAAAGAAAGATGTCGATGAGGAGGCCAAGACAGGAACTGATCGAGCAGGGAGTGCTTAAGGAGCTTCCTGACAATGAACTAGGTGAGGCCCATGGCCACAAGACACCTTATGTGAAGAATGGTCACACTCTGCCTGTAGGAATTGGTGGAGGTCTGGGGCTAGAGCAGATACACTCGCCCTCTGAATCTGAATTTAGAGTCAACCCTGTCTGGCTTCCAGAGCCCGATGATAAGAGAGGTCGTGGCCCTTCTGATGGGGATCATCATGGAGCACTGGGCCCTCGGGCCTCCAATCAGGATGAAGGCAGGAGAAGTGGTTGGTCTGTTGGGACGGAGGACTGGAAATCTAATCTGGCCTGGCAGGGAGATGATATCAGACATGGTGGAAGGCTACATGTTGAAATGGACAAGAGGCCTGGGCTAATGAAAGCCCCCTCTGAGGATGGGCGCAGGACTCGTCCCGAGCCGGACTGGAAGCCAACGCTTCCTCGCCACTCGTCTGTCGAAGAGGGAAGGGGAAGACAAGAGTCTGACAGCAGTCAGTACGTTCCTAACTCGGAGATTCTGAGGGACACACTGCGAGAACCTCTGCCTCCGAAGCAGTCCATCATGCCGCCCAAATGGCTGATGACATCCACCCCGGAACCTGGTGCTGACAGCTTGCCCCGCACCCCTGTCCACAACCCCGCAGCTgctttctcctcttcctctgcctcctccaactcctcctcctcatcagcTGTCAGCGCAGCTGGAAAACCACTACGAAACGTATCCTCAGCTGGCGCCAACACACAGGCCTCCAGCAGCGCTCCCCTTACCACCTCTTCAGCACCATCCTCTATGGGCAATGTCCCAGCCCAGCCCACCAAACAACCCCCTCCTCCACCCAAACCGATCAACCGTAGCAACAACCCCGCAATGTTGGCCTCCACCCTGCATGGGGGTGACGGCAGCGTCCCCCTCTACTGGTCCTGTTGGAAGCGTGAGGGTGACCATGACCTCTACCTGTCCCTGCCTGTCTACCTCTGCCGGCGGGCAGGAGGCATGCGCACAGCTGAACTCACACAAGGAGGTGTCAACCTAGTACCGGCCAAGCCCTCACCCCCTATGCCCCCAAAAAGAACCACGCCTGTCACCAAACGCAATGCAGAGGACTCCCCTCTGACCATTTCCTCCCTACCCTCCATCCTGTCAGAGGACATGAGGGCCAACATCCCCGGGGGTTACCAGCTGCCTCCTCCTCCCCCATCACCACCTCTCCCCACACACATTCCCCCTTCCCCACCACGGGCCCACACCCATCATCTCCTCCACCAACACTCCTATCCCTACCCCCTACCCCAGCCACTTCCTGTCCACTTTGACCCTCCCAGCCCTCCGGAGGAACCGCCAGCCCGTCAAGCTCCTGTTCCCTTACACATCATGATCCAGAGGGCGCTCAGTAGCCCAGGACCTGCTCTCCCACACCCAGATGGCTCCCAGCGTGCCCACTCACTTCTGTTTGAGACACCACCGAGACCAGGGCAGCCGCCACTGGCAGTCACCATCCAGCCTCTCAAACTGGATGAAGATGACTACTccgatgaagaggaggaggaagaggacgatgacgacgacgatgatgatgaaCCACCACCTGATCACCTCCCATCCCCTCATTCCCAGCCAGAACTTGAGCCTCGCAGCGCAGAGGTGCCTGGTGGGGACCTGAGCGTCAGCATCATCCCTGAAGGAAGCAATAGCAgcgaggaggaggaagatgaggaagatCAACAGCCGGAGGAGAGCGACTCAGACGGGCCCGTGCTGTATAAGGACGATGAAtcggatgaagatgaagaggacgACAGCCCACCAAGTGCTCTGGCCAGCAGGGTGAAGAGGAAGGACACGTTGGCGCTGAAGTTGAGCAGTCGGCCCTCTGCCCCAGACAGGCAGGCTCCTGAGAGGCAGGCCAAAGTGGAGCACACGGGTCTGTCGTGGCAGAGCAAGGAGCAGTGGGAGGCCATCCGCACACAGATTGGTACTGCACTCACACGgcGATTGAGCCAGAGACCTACTGCTGAGGAGTTGGAGCAAAGAAACATTCTCCAGCCCAAAAATGAAGCAGACAGACAAGCAGAGGTCAGGGAGATCAAGCGCAGACTCACCAGAAAGTTGAGTCAACGACCGACTGTTGCCGAACTACAAGCTCGAAAAATATTACGTTTCCACGAGTACGTGGAGGTCACATGCGCTCAGGACTACGACCGCCGTGCTGACAAGCCATGGACCAAACTTACTCCCGCAGACAAGGCTGCTATTCGTAAAGAGCTCAATGAGTTTAAGAGCTCCGAGATGGAAGTGCATGAGGAAAGCAGAATTTACACAAGattcCATCGTCCTTAATGGCGTCTTTTAACTGGAAAATGAAGCACTTAGCCGGTGGATATTGGGAGGAAATGGCTGTTTCTTTGGTGAGGAGCCTCAGGGTGTCGGAGCTCCTTCAGACTGCTTTTACTATGAATGTACTTCTTCAGATGCACAGGAACGCCTGGAGCATTCAGAAaccaatcaaaacaaacaaaacagaccGTTTCTCAGTCGTCCACCCACTGACGTGTGGGACGGGTGACCTCTGGGGGACAGATGCAGTATTTCTCCTGGACTTTAGGGGACCCATGTGCCAAGACAGAGAGACGATGAAGGACTTTAGAGGATTTTACTTGTGCCAATGGCAGATGTTCCTCTCTCTATACTCTCTGAATGgcctttttttctgcttttacttCGTATGATAAATGTTATTTCCTTTCAGGGAAGTGTAACaaagttaaaaatagtaataataatgatgtgacaataataaatacagtaatactacAGTAAGTGTTAGTTACTGAGCATAGCGGGGCAGACAGAAGAACTGCAAGAGTAAGGCCTGAGCCTGAATGttaattgtgtatttgtgtatgtttgtataggCTGCTGTAATTTTTCTCTTAGTTTGACTCTTTGGAACGTTCATAATGTTAGAAACTTTAAGGcacaagatttttttaattcataactTTGGCTTTGGCCCTCTTTATTCAAGACCGGGTTACAGATTCCCCTTACTTTGTGGTCTTCGCTGTTTGAGAGCAATAGAAGAAAATAGGATCAGATTTAGGTAGAATGTaagcatttcatatttcactaTTGATCTGCAGCAAAACTGTGATCTATTttgatctctcttttttttttatcatatcgCCTTTTGTAAAAGTGAGGTCCAGCTAGTTCAGTTTTAAGAAGTGTCCAAGTCGTGtttacagaatatttta

Function

symbol description
phactr4b Predicted to enable actin binding activity; protein phosphatase 1 binding activity; and protein phosphatase activator activity. Predicted to be involved in several processes, including enteric nervous system development; morphogenesis of embryonic epithelium; and negative regulation of integrin-mediated signaling pathway. Predicted to act upstream of or within nervous system development. Predicted to be located in lamellipodium. Is expressed in Purkinje cell. Orthologous to human PHACTR4 (phosphatase and actin regulator 4).

NR:

description
phosphatase and actin regulator 4B-like isoform X6

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0048484 enteric nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:2001045 negative regulation of integrin-mediated signaling pathway biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0001843 neural tube closure biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

RNA

RNA id representative length rna type GC content exon number start site end site
TU171232 False 542 TUCP 0.58 2 24326707 24327973
XM_043261588.1 True 3716 mRNA 0.53 19 24317482 24339788

Neighbor

gene id symbol gene type direction distance location
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding downstream 1350 24311489 ~ 24316132 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding downstream 118828 24196697 ~ 24198654 (-)
rspo1 rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686 coding downstream 163060 24134883 ~ 24154422 (-)
utp11 utp11,utp11l coding downstream 230143 24084487 ~ 24087339 (-)
pnrc2 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 coding downstream 501693 23811951 ~ 23815789 (-)
LOC122360159 hivep3,LOC107704966,LOC107732829,LOC107587744,LOC107700668,LOC107755436,LOC107597126 coding upstream 32315 24372103 ~ 24430886 (-)
ptprub ptprub coding upstream 286806 24626594 ~ 24808670 (-)
taf12 taf12,LOC107566933,LOC107588503,LOC107755488,LOC107700725,LOC107705731 coding upstream 496298 24836086 ~ 24839787 (-)
ctps1b ctps1,ctps1b,LOC107704971,LOC108433599,LOC108415321 coding upstream 500141 24839929 ~ 24846153 (-)
LOC122360137 LOC107755513,LOC107705663,LOC107556091,LOC107704976,LOC107588498 coding upstream 553058 24892846 ~ 24906521 (-)
G115954 NA non-coding downstream 128888 24187937 ~ 24188594 (-)
G115939 NA non-coding downstream 239615 24077631 ~ 24077867 (-)
LOC122359981 NA non-coding downstream 260220 24044760 ~ 24057262 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding downstream 495194 23820519 ~ 23822288 (-)
G115911 NA non-coding downstream 500382 23816900 ~ 23817100 (-)
G116174 NA non-coding upstream 481713 24821501 ~ 24823410 (-)
G116179 rab42 non-coding upstream 493748 24833536 ~ 24833958 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding upstream 495311 24835099 ~ 24835364 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding upstream 739479 25079267 ~ 25082596 (-)
G116242 NA non-coding upstream 837664 25177452 ~ 25178607 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 642137 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 707641 23582993 ~ 23609841 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 793100 23519808 ~ 23524382 (-)
G115554 NA other downstream 1383515 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 1416295 22892102 ~ 22901187 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 24852 24364640 ~ 24369566 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other upstream 74438 24414226 ~ 24473365 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 1324931 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 2039884 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 2081930 26421718 ~ 26507052 (-)

Expression


Co-expression Network