serinc2l (serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105)


Basic Information

Item Value
gene id serinc2l
gene name serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24414226 ~ 24473365 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171247
gatttcatttttattttattcgattaaaaaaacatgtattcaCACAGCATATTACTGGACATGATCATTTTTTGGATGCATGTAATTGCTTCTACTAAGGGAGTTCAGAATTTGGAAATAAGGTATAACTCATTTTAGAAAAGATTGATGCACTATTTTGAACACATAATAATGTGACAGCATGTGGACAACAAGCCATTCATCACTGCAAAGCTGTTTACAACTGCCATAAATTTTCATGCACTAACTCTGTTTTGGCAACAAAGGATAAATCAATTATGGttgtcaacatttttttttttttttttttttgaaggcattgcaagaaaaaaaatgttcaaaaaagcCTTTTCTGATACCAGCTAGACAAACTCAAAACCACTAGATGCCAGTATAGTTCAAATACAGTTTCAAATGCAACCGATTTTTTTAGTTCTCAAACCTTTGTAAGTACTTATTGGaatgcactgatttttttttttttttttttttttttttttttttttttaacactgatagcATTTTAACTTCAGGGTTCAATGCATTGTACGATAGACActacaattaaacaaatatacaatttCACTCCgatttagcacttttttttctctcaagcAATGGGGAGAGAGGGCCTTGGGCAGCCCACGTGCGCTGGGGGGGCTTGAACAGGGGGCTGTTTTCAGTCCACGTCCTCTGTAGAGCCCCTGGAACTTGTGCATCCAGCAGATAAGCCCAATCAGACACACCCTTCCCTTGTACAGCTTTCTACACCACACTCGACCGGGGTCTACCGCACTGCCATAAACAACAGACTGTGATccaaatgaatatattatggTGCTGTCGATCCATCAGAGGCACATGCTAGCATACCTAGTTTGTTGTTTGGTGTGGCAATAGATAATTTAATGTGAACTAATGCGTTTAGATGGCACTTACGTATGAATGAACGGTTCGGGGCTGGTTAATGTGGTAAAGGTGATTATATTTAATctgtaaatgtttctgaaaatgaatgttaatcCACCTGTGACACTTTGTATACttttagtgggtttttgttattACTTTGATTAATTTGCAAGCACATGCTGGAGTAATATTACATAAGAAAATGTTCTAAAAGTGACCATATGTTTAGCTTACATTTGTGTAAAATTGCTAAAAAGCTGTTATGAAAGCAAAATATGAAGTTCATTTCAAAAGGGGAAAAACTG
>TU171248
gatttcatttttattttattcgattaaaaaaacatgtattcaCACAGCATATTACTGGACATGATCATTTTTTGGATGCATGTAATTGCTTCTACTAAGGGAGTTCAGAATTTGGAAATAAGGTATAACTCATTTTAGAAAAGATTGATGCACTATTTTGAACACATAATAATGTGACAGCATGTGGACAACAAGCCATTCATCACTGCAAAGCTGTTTACAACTGCCATAAATTTTCATGCACTAACTCTGTTTTGGCAACAAAGGATAAATCAATTATGGttgtcaacattttttttttttttttttttttttttttttttttttttttttttttttttttttttttgt
>XM_043261016.1
CCGTTACAGTCGTTACCTTCAAATACAGGAATAAACTGACAGAACGAGAAATAGCTCGTACTGTAATTGACTGCTAGTTCGTCTTCTTAAAGTTTGGAGCcgtttgtttattaatacagaATGGGAGCCTGTATGGCGTTGTGTTCCCTTGCGAGCTGTGCCTCGTGTTTGTGTGGCTCCGCTCCATGTCTCCTCTGTGGCTGTTGTCCTTCTTCCAATAACTCCACCGTCACCCGGCTGgtcttctctttcttcctcctcCTGGGGACACTGGTGTCTGTAATCATGATCTTGCCTGGCATGGAGACGCAGCTCCGCAAGATTCCTGGCTTTTGTCAAGGCGGAACCACAATACCAGGAATCGAGAACCATGTTAACTGCGACGTGATTGTAGGCTACAAATCGGTGTACCGCATGTGCTTTGCTATGGCATGCttctttttcctgttttcaGCAATTATGATTCGCGTAAAGAGCAGCAAAGACCCTCGCGCCGCTGTTCAGAATGGGTTCTGGTTTTTCAAGTTTCTGATACTTGTTGGCATCACCGTTGGAGCCTTTTTCATCCCGGATGGAACATTTCATGATGTTTGGTTCTACTTTGGTATCGTGGGCTCCTTCATGTTCATCCTGATCCAGCTCATCCTCTTGATCGACTTTGCCCACTCCTGGAATGAGGTGTGGGTGAGAAATGCTGAGGAAGGCAACGGCAAGTGTTGGTTCTCAGGTCTGTTGTTCTTCACCGTCCTTCATTATGCCCTGGCCTTTGCAGCAGTCGTGCTGTTTTATCTCTACTACACCAAACCCGACAACTGCGCCGAACACAAGTTCTTCATCAGCTTCAACCTTATTCTCTGCATCATCATATCTGTGGTTTCTATTCTGCCAAAAGTGCAGGACGCTTCACCTCAGTCTGGTCTGCTTCAGTCTTCTATTATTACTCTGTACACTATGTACGTCACCTGGTCAGCCATGACCAACAATCCTAATCGTGAATGTAATCCTAGTTTGCTCAGCCTGGTGTCCAATGTCAGCACAACTGAGGCCATGCCCACAAGCTCACCTGGGATGGTGCAGTGGTGGGATGCCCAAGGCATTGTGGGATTGGTTATCTTCCTCTTTTGCACCTTTTATGCCAGTATCCGTTCATCCAGTAATGCTCAGGTGAACAGGCTGATGCAGACGGAGGAAGGGAAGGGCACTATGGGAGGGGAGGAGGTTGGCGAAGACGGACTGAGGCGTGTCGTTGATAACGAAGAGGATGGCGTCACATACAACTATTCCTTTTTCCACTTCCACCTTTTACTAGCCTCTCTCTACATTATGATGACACTCACTAACTGGTACAAGCCTGATACAACCACTCAGGCCATGCAGAGCACAATTCCTGCAGTGTGGGTGAAGATCAGCTCCAGCTGGCTGGGTCTGGGCCTCTACCTGTGGACGCTTGTGGCTCCTGTCATTTTCCCCAGTCGAGACTTCAACTGAGCTCGAGTGGGTGAGACTCTCACCTGTTCAAACTGGCCGTGTTTGTGCTATGGTATAAATATTGCAATCTACAAATACCATTAAATAGCCAACactaaatgcaatgcaaatctGAAACCGACATTTGGTGACTAGTCTCGTAGGCCTAGTAGGTACTTAcacgtatttaaaaaaaaatgcatgggcAACAACAAAAGTATGATGCCGTGacaagtatttaaaaattacgCTAAAGTATATTAATTGTTCAGTAAATTGACTCATGACGTGAGGATTACTGCTGTGCAGAAAGTCGCCATTCATTATTAGCACACCTGAAGCACACTTTTGTGAGTAACATATCTTTGCAAAAATGCCAGTTTGAATAACAAATTCCGTTTTGCTTTGATTCCTCCATCCTTTTATCTCATATTCACGTCCTTAAGAGCTAAAATGCTTGGACAATTAAGGAAATGAGAAGCACCTTTTTGCTTAACGATTGATTCGATGCTGTCTCATTTATTACACTACATTTTAAATCGTTGGCGGCTGTGAGATTTGAAAGTAATCTCTTATGCctaccaaagctgcatttatttggtcaaaaatacagtaaaaccgtattattgtgtaaaattacaataaaaaaactgcttattatacatttaaaatataatttttagttACAGCAAAGCTAATTTTCATAATCCTTTACTCCAGTTTTTGGTGTCACATGAATCataattcagaaataattctaatatgctaattttgtgctcaagaaatatttattaatattagcaaTAGTGAAGTTTTGCTCgatattttggaaaaaacattaaatattatttttatgagtcTTTCTGCTTATTTTGCTTACTTTAATGCTGGTGTTATTCTGTCAAAAGAGTCACTATATCTCCACACATGAAGGATAAAAGAATGAAATAGGTCGCTTCTAGCGCGTTTGTCGATATCTTGAATTATTCACCATCACATGGTACTTGAGGGttattttgttgtcatttcaAACTCAGTATGGCTGTTAAGTATGTTTTCTAAAGTCAATATTACTAGTTTATCTTGTTTAACAGATGCAAGCTACTCAAACCTAAGGCCACGCATATCCAgtgcaacaaaataaacactatcCTACAGACCATCATCACAGTGGTCCTAGCCACGAATTCAAATATGCATTATACTGCTGCTAGAAACCTACTCTACCtgaagaaaaaactttttttttttttttttttt

Function

symbol description
serinc2l Predicted to be integral component of membrane. Predicted to be active in membrane.

NR:

description
serine incorporator 2-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K24176 SERINC2; serine incorporator 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU171247 False 1217 lncRNA 0.35 2 24441327 24473365
TU171248 False 351 lncRNA 0.26 2 24414226 24473365
XM_043261016.1 True 2727 mRNA 0.42 10 24442036 24451084

Neighbor

gene id symbol gene type direction distance location
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding downstream 98094 24311489 ~ 24316132 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding downstream 215572 24196697 ~ 24198654 (-)
rspo1 rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686 coding downstream 259804 24134883 ~ 24154422 (-)
utp11 utp11,utp11l coding downstream 326887 24084487 ~ 24087339 (-)
pnrc2 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 coding downstream 598437 23811951 ~ 23815789 (-)
ptprub ptprub coding upstream 153229 24626594 ~ 24808670 (-)
taf12 taf12,LOC107566933,LOC107588503,LOC107755488,LOC107700725,LOC107705731 coding upstream 362721 24836086 ~ 24839787 (-)
ctps1b ctps1,ctps1b,LOC107704971,LOC108433599,LOC108415321 coding upstream 366564 24839929 ~ 24846153 (-)
LOC122360137 LOC107755513,LOC107705663,LOC107556091,LOC107704976,LOC107588498 coding upstream 419481 24892846 ~ 24906521 (-)
eva1ba eva1ba,LOC107700680,LOC107556086,LOC107734091 coding upstream 547351 25020716 ~ 25033341 (-)
G115954 NA non-coding downstream 225632 24187937 ~ 24188594 (-)
G115939 NA non-coding downstream 336359 24077631 ~ 24077867 (-)
LOC122359981 NA non-coding downstream 356964 24044760 ~ 24057262 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding downstream 591938 23820519 ~ 23822288 (-)
G115911 NA non-coding downstream 597126 23816900 ~ 23817100 (-)
G116174 NA non-coding upstream 348136 24821501 ~ 24823410 (-)
G116179 rab42 non-coding upstream 360171 24833536 ~ 24833958 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding upstream 361734 24835099 ~ 24835364 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding upstream 605902 25079267 ~ 25082596 (-)
G116242 NA non-coding upstream 704087 25177452 ~ 25178607 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 44660 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 74438 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 738881 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 804385 23582993 ~ 23609841 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 889844 23519808 ~ 23524382 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 1191354 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 1906307 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 1948353 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 2333755 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 2336952 26810317 ~ 26812974 (-)

Expression


Co-expression Network