G116164 (LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931)


Basic Information

Item Value
gene id G116164
gene name LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24835099 ~ 24835364 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171502
GGGTCAAGAGTTCAAAGGCCTCTTTCACATTGTGACCTGTTTTGGCAGAGGCCTCGATGTATGGTGCTCCCAGTTTGCTTGCGAGCTTTTCTGCCTCAGTTCGGTCCACGGCTCGCTCTCCAGCTTTGACCCGGTCACTTTTGTGTCCCACCAGCACAAAGAGCACAGTGTAGGGCTGCACACGTTCACACACCTCTGCGTACCACTGCTGCACGTTTTCGAAAGATTTACGGTTGCCCAGATCGAAGACCAGAAGACCTCCGACT

Function

NR:

description
PREDICTED: ras-related protein Rab-39A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171502 True 266 lncRNA 0.54 1 24835099 24835364

Neighbor

gene id symbol gene type direction distance location
ptprub ptprub coding downstream 26429 24626594 ~ 24808670 (-)
LOC122360159 hivep3,LOC107704966,LOC107732829,LOC107587744,LOC107700668,LOC107755436,LOC107597126 coding downstream 404213 24372103 ~ 24430886 (-)
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding downstream 518967 24311489 ~ 24316132 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding downstream 636445 24196697 ~ 24198654 (-)
rspo1 rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686 coding downstream 680677 24134883 ~ 24154422 (-)
taf12 taf12,LOC107566933,LOC107588503,LOC107755488,LOC107700725,LOC107705731 coding upstream 722 24836086 ~ 24839787 (-)
ctps1b ctps1,ctps1b,LOC107704971,LOC108433599,LOC108415321 coding upstream 4565 24839929 ~ 24846153 (-)
LOC122360137 LOC107755513,LOC107705663,LOC107556091,LOC107704976,LOC107588498 coding upstream 57482 24892846 ~ 24906521 (-)
eva1ba eva1ba,LOC107700680,LOC107556086,LOC107734091 coding upstream 185352 25020716 ~ 25033341 (-)
stk40 stk40,LOC107704982,LOC107755633,LOC107588492,LOC107705547 coding upstream 218334 25053698 ~ 25071225 (-)
G116179 rab42 non-coding downstream 1141 24833536 ~ 24833958 (-)
G116174 NA non-coding downstream 11689 24821501 ~ 24823410 (-)
G115954 NA non-coding downstream 646505 24187937 ~ 24188594 (-)
G115939 NA non-coding downstream 757232 24077631 ~ 24077867 (-)
LOC122359981 NA non-coding downstream 777837 24044760 ~ 24057262 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding upstream 243903 25079267 ~ 25082596 (-)
G116242 NA non-coding upstream 342088 25177452 ~ 25178607 (-)
G116237 NA non-coding upstream 376029 25211393 ~ 25558018 (-)
G116264 NA non-coding upstream 858745 25694109 ~ 25695357 (-)
G116247 LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434 non-coding upstream 869336 25704700 ~ 25706796 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 361734 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 465533 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 495311 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 1159754 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 1225258 23582993 ~ 23609841 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 829355 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 1544308 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 1586354 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 1971756 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 1974953 26810317 ~ 26812974 (-)

Expression


Co-expression Network