G116247 (LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434)


Basic Information

Item Value
gene id G116247
gene name LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25704700 ~ 25706796 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171631
CAGCGTTCACTCACTGGTGATGCTGCTCTTGGCAGCGGGGGTCTTGTCAGAAGCGTGTCCTCGTGGGTGTTTGGACAGCAGTGCGGCGGTGGGCAGGTCTGTCAGACGGCTCGCTTTAATGGGCAGAGGCGGGGAGGACGACGGGGAGCGGCTGTTAGAGCTGTCACTCATGCAGGACTCCGGGCTGGGGGCGGAGCTCGAGGAGCAGACGTAGGCTATCACGCCTCCTTGGAAATGAGGAAAAGGGGGAATGTCTTAAAAAtgcacctcaaaaaaaaaaaaagaaaaaaatgcaagcaCAAAACGTACGAGCGTATGAGCACTAAACTTGATTttgaatatgaattaaattttcGGTCACAGAGAAATAAAAGTAACCACAACCATGTAACTAAATCCATGCAATAAGAGCGTTTTGTTTAACCTGGTTGCCAGTATTTCTCCTTTCAGTTTAAGCGGATGCACTGCAATGAGTAAAAAGcgggatttttaaaaaaatgcacattaaaaaaaattgtttataaaaatatggcCATCTATGCAGAGTACTAAACGTGATTTCAAATATGCCTTTTTTAATACCAAAAGAAATCTTACATagttaacaaaataattaaaaaaaatatatatatatatatataaattaaaatgatattaaaacaaaaacattaaattaataactactactactactactactactactaataataatatatattttaaatcagtaaaatttacttttttttggccTAGTTgccaacatttctcattttagttTGTGGATATAGTAagatagtaaaaaaacaaaaacaaaagagaactttttaaaaatgtaaacccagaaaataaaatgttaagatATAGAACAGTTCACtaaaatgaaactcatttgttCCAAAACgtataaaaactgttttttttttactattttttattttatttgaagatgtactaaaataagatatttttttatatatacgcACACTCTAAAAGAAGAATTAAAACTATTATGTACAGcacaaaacatgcacaaatatGCGTTTCCTAAACTACAGAATGGAAATGGAACATTTGAACATTCTTgatgaaaaagataaaaaaaaaaaaaacaaagtaaatgaatcacattacattttccaaaatatgttttactcGTGATACAATTTGACCTGGTCTGTATTCATTGACATAATGAATAACTGCATTACGTCAGCTGATCTCAACAGGCGAGCTGGTCGTCTAGGCATGAAGATGGCACGCAATTATGCTCGCATAAAACGTTATTCTTTATTGCTGACAcaattgtataattatataatctaaTGCGGTGCACACGTTGGATGAACCTCCTCGTTTTGAACAGCTCATGACCTATTTTTAGATGAATGAATCTGCACAGGATTATGTTTAATTACACTAACCTAGTACACTAACACTAATACGGTAGGCTATAATaatcatacataaaataatgagGCTATAATAAAAGCCATACAATTTGATTCCATCccctttgagtgtgtgtgagctgtgTAAACAGTCAATATcacaattatgatatttaagATGTTCCAGTGCGCGAATAAATGGGTTTATTCTACTTTTGCATTCGCAAAAGCAAGCAAAACTGTGTGCATTTCTTTAAACGGACCAGGGAGGTTACCTAACCAGCAACAACCCTTAGTTTCTCAGACCCACCCACACGTGGACCTCTCATGTTTTGTACGGGAAGAATATCTAGGTCACTAGCTGTCTGCCGCTCCTCACGTGGTACTGCAGAGAGTCTCGCGTCAGGGCAGTGTGCTAAATTATGCAACGTGCCGCCTCGACCAATCGGGCGCCGCGCACCGCGCACGTCACGGCCAATCAGCGGCGGCGCCCCGACTCCTAGTACACACGGGCACATGGCTAGGCTACGAGAGCCATGTGAGCTCGAGCCTTCTAGTACTCCGAGTACCGAGCGCGCGTGACGTCACGGGCACTCCTAACCCACATCCACGGTTTGACGGGCTCTACGCTGCAGC

Function

NR:

description
PREDICTED: nuclear receptor subfamily 1 group D member 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171631 True 2027 lncRNA 0.39 2 25704700 25706796

Neighbor

gene id symbol gene type direction distance location
znf385d LOC107671428,LOC107592108,LOC107688204,LOC107716984,LOC107569797 coding downstream 77601 25568531 ~ 25627099 (-)
si:dkey-82o10.4 NA coding downstream 385622 25314054 ~ 25319078 (-)
LOC122360982 rab5ab,LOC107688205,LOC107707637,LOC107716989,LOC100701272,LOC103038585 coding downstream 404839 25294224 ~ 25299861 (-)
LOC122360869 LOC107688204,LOC107569797,LOC107592108,LOC107716984 coding downstream 472698 25226157 ~ 25232002 (-)
LOC122360868 efhb,LOC107671426 coding downstream 498492 25200951 ~ 25206208 (-)
nek10 nek10,LOC107728980,LOC107552505 coding upstream 6115 25712911 ~ 25728665 (-)
lim2.5 lim2.5,lim2,LOC102215845,LOC100699404 coding upstream 24397 25731193 ~ 25733582 (-)
vsig10l vsig10l,LOC107707630 coding upstream 28727 25735523 ~ 25745044 (-)
etfb etfb,LOC107688199,LOC107707641,LOC107728982,LOC107671471,LOC107552519 coding upstream 39769 25746565 ~ 25752100 (-)
LOC122360054 LOC107707625,LOC107688253,LOC107568862,LOC107733023,LOC107671396,LOC107552509,LOC100004033 coding upstream 377978 26084774 ~ 26088904 (-)
G116264 NA non-coding downstream 9343 25694109 ~ 25695357 (-)
G116237 NA non-coding downstream 146682 25211393 ~ 25558018 (-)
G116242 NA non-coding downstream 526093 25177452 ~ 25178607 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding downstream 622104 25079267 ~ 25082596 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding downstream 869336 24835099 ~ 24835364 (-)
G116282 NA non-coding upstream 69940 25776736 ~ 25778404 (-)
G116351 NA non-coding upstream 313729 26020525 ~ 26073006 (-)
G116350 NA non-coding upstream 355495 26062291 ~ 26069534 (-)
G116359 NA non-coding upstream 364364 26071160 ~ 26128626 (-)
G116368 NA non-coding upstream 398221 26105017 ~ 26282857 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 1231335 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 1335134 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 1364912 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 2029355 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 2094859 23582993 ~ 23609841 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 672876 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 714922 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 1100324 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 1103521 26810317 ~ 26812974 (-)
G116668 NA other upstream 1167602 26874398 ~ 26876610 (-)

Expression


Co-expression Network