G116604 (slc9a1,LOC107688187,LOC107564092)


Basic Information

Item Value
gene id G116604
gene name slc9a1,LOC107688187,LOC107564092
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26379672 ~ 26384187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU172219
TGTTTGCAAATGAAAACTTTATTCACGTATCTCTGATGACCATGTTAGTTCCCAGAATGCAAGAGCGAAGTGGTGAAGCGACTCGACAAATACAGTGAATCCTTGTAGTGCTACactgattttatattatatagctCCAATCTTATACTTagatatcatttatttttgtgtgcatgtgtatatataaaataaacattttattgcaatttcaaATGACAATGAATTAGTCCGGTCAAAACAGGAGATTATAGAACAGTAGATGAGTAACATTCAGACAAACTCAGCTCTCAGAATTGGACCCACAACAAATAATCATTCCTAGGAGTTAAAAATCCAACCGTTAGCCCATAATAAAATCAACCAACACTCCTCACATCAGAGACGTAAAGTGGACGCCTTAATTATTgctgtgctttaaaaatgattcgTTTTTAAAGGTTGTTCATGATAAAGTGCTTCAAACGGCCTCTGAAACAAAAGGGAAAGCCGAAAGCTCGCGGTCATGAAACAAGACAAAGCGATTGTTCCTTTGCGCTTGTGTTTGGtgcagaaattaaaaataaaataaaataaaatcatgcacattTCAGTAAACAGTCATTCAGAGTTCATTTAGAGATAAAGCATGTTCGAGAGGTCTCCGTGATCAATAATGCAACACCAAACATCCCGAAATTAAAGCTAAAAGAGTGTAAACAAAAGCAATGAGCGCTGACAGAACACGTCTTGACTGGTCCTTTCGAACCGCTCGAAGGTTATAATGGCGTGAAAGTATGGCTCGTGGTTTCATCAACAATCATTTCGGCTTGTTCAGTCTTCAGTCTGCGTTCGAGTCCCATCGTCACAAATCAGATGAAAACGAGCTCAGGTTATTAAACCCCACGTCTCCAGTCTGCAGCCAAAAGAGAAGCGTGATGCATCTGACTCTGATCCGCAGAGACGAACAGCAGCTTACGGTCGTTTGACGAtgactaaaaattaaaaaaagcgccgaaaacaaggcaaaaatatGCAAAGCAAAAAAGGTAAACAGTCATAAAGCAAACATCAAGTACTTGCCGTCTGTATAAAGAGGCTTTATGGTGAATGTGATTGGGAAAATTACACAAATGATGTTAACCAATCAGTGGCAAGCAAAACATAATACAAGCATGCAGGCgtatacagtaaatatacagaataccagaaaaaaaattaaataaaaaaactcatcaTTGGCATTCAgcttcatgtgtttcagaatgtttcgtttaaaaaaaaaggaaattctgtcattatttaaccACCTCTCGCAGGTGAACTCaaactaaaatgtgaaaaggataaataaaaagttgaaattaTTATAGAATCTCAAAATGGCAGATACTTGCCAACGCAACgttgatcattttcatttagtttaattcgaggcactaaaataactaaaagtgaaatgtaatgaatacaagctataaagatatatattttaaaaaaaaaaatggatgcattaaaataactagaactaaaataaaaatgagtaatTAAAACGATATTGTtatgttaaaacaaataaaaaataaacaaattttatttaaattaaactactAAAGAAAACTACTTGATAAAAACCAGCTTGCAATATTTGCAGGAACTAGACGCCACTGAAAATAACACTGGATTCAAACCATGCATAAAGATTATCCGAAACTGACAGAAAATAACGAAATGAGATCGAgttaataatgacagaattcgCGGTTTtgccaaaatgtttatttttaaacgttcCCACTTTCCCCCGCATTGATGCGAATACTGCAACAAAAAGCTGACATCCGTCAAACacgaccagctaaaaccagactAAACTCCCCAAAAACCAGCAGAAAGTGCTTGAGCTTCAGCGAAGGCAGTGACCGATCTGATGAGGAAGGCTGAAAAGGAGACGTCATCTCTTCTCCAAAAGGCAAAcgtaaaaatgctaaataaccGGTCAGTTAGCGCCGTAATACTTCAAAGCAGAATATAGACATCTCTGGACCTTTAGAGTTCacatctgtaaaatatatagatatgatttttacattaaaataagacTAATCTAATCTCTGTGCATGCAAAAGACTTTCAGATTTTGATATATTATTGATTCTTTCTGAGATACGCGATGCACCTCCAGAGCAGGATCTGGGCTGCGGGAGAATCAAAGGCCGGTGTTTCGATGCTCGCCGTGCAAAGGCTTTAAAGGGAATAATTCAGAAGAATTCATATTTCAGACTCTGCATAGCTCTTTCGGGATACAATCACACCGTTTGGGGGTCATGCAACGCAAATCAAACCTGCGCTTCCGTCACATGGGCAGTGaggcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagtgcgtgtgtgtgcgtgtgtgtgcgtgtgtgtgcgagtgtgtgtgcgagtgtgtgtgtgtgcgcgtgaagGGCGTCGGGAAAGTGTTCATCCGCGGGACttaaaaaggaataattcacccaaaaataagaTATCGGTTCTTTactagaaaaaacaaaaaaacaaaaaactacttCTGGGGTGTCATTTcatctcacaattttgactaGTTTTGATCTCCTGTCCTAATTTCcactttatctcataattaccatttttaatcatttccgTACGTCGAGTTTGACTCATTTGATCATTTCGACTCCCTATCTGGATCACTGGATCAGAATTCTGACTCATACCGtgatgttttatgtaaattacgGCATATCTCATAATTACGACTCttcataaacaattttttttgtctcataatTCATGCCCACTAGCGTCTTATAACCGTTAtcttttaactattattataacctACTTTTTTATATCACACCTACGGTATTACTTAGTGTGTCATAATCATATTTACCttatattttgactttttatgtcaGATTTATGACTTTTCTTTCAATATGAGATGTTATTATGGCTTCTCGTCTCATAATCGTGACTCACCGTctcatattttctttaattaaagctTCTTGTATCATATTTCTCGCTCAGTAtcttaaatttggatcattaacgATTTCCCTAATGCTTACTTTTTATCTCAAATTTGACATTTATCACCGAGCGCACCATAAATGCGACCTCATAATCATAGTTTTGAGTCTCAATTATAATTTAGCGCTTTATggcataaaaagtcaaaatattagatatggatcataattatgatttactATCTCATACTGGGTCATGATTACGATCTCGTTCCGTGGCACCGAACCATACAGACGTCACTTTTACGATGCTTTCTGGAGATCGCCAGCTGGGTCGCTGTGCACTTTTACGGAAAAGAGCGGCGTTAAGATAACCATTCGTAAAAAGCACGTGGGTTCGGAAAGAAACGAAGAGATGAACTTGTAGCTtctggatgaactattcctctaAAACGGCTCACCAAAGCGCTTGAGTGCATTTAAAGGGAATTAAAGACTATTAGACCGAAACGTGTTTTGATATAAAGTACAAGCTGAACGTAATTGTATTGTGCAATCGTTTATCAGGTCTGTTATGAGCGTGACTTGAACGGGCGAAACAATAAGCCACTGTAAATATGCACCGTCTGCATGAGAAACACAAGAAAGGCCTTAACGTGACCGCTTTGCTCCCGATAAACGAATCGGATCCCCCTAGAGGTCAGCGATACTCGCGTCAACGAAACGAAAAGGCAATTGGCGCGAACGAACAACAAGAGCATCGCGAACTAGAACGACGGGAGCGTTTCACCTGAATAGACTGAACAGTGCGACCGTTTGGTAATGCATAGATCCGTTCCCCTCGCGTCCGTAGCAAATGCCAAGCGGGAACATCAGCTCCCCGAACCGGAACACGATGTGACCCGGAAATAATAAACCTGATATTGAACAATGACAATCATCGCTTGGGATTCGAGTCGCATCATGCCTGGTAAGGAGgctacaaatgaaaaaaagagcaatggtgaacaaaaataaatggcttATTTCGATCGCTCCCTTGCGGTTCCTTTATTTGGGTTCATTTTCCGTTCGTTTTGGCTTCCTGCAGATTGTGCATCTGTCCTCCGTGTTACAGCAGTTAGTGATCCGGCCGATGCTCTCGCTCGTCTCTCACGGGAGGAAGGGctcgtcctcctcttcctcttcggCGGCGGGGCCCGGGTCGCTCAGGCAGCGCATCAACCGTTGCTGAGGCTCCTTGTCGTCGTCCCCGTCGTCCGGTTTGTCTTTTCTCTGCTTCGTGGGAGAGGGAAGCTTCATGGTGAGGCCGCCCTCCTCCTCCGCGCTCACCTTCGGCTGGCCTCCCTTCTTGCCGAATTCGTTCACCACGTTGACGGACTCCGGGCTCTGCGGCGAGGCGAGGTCCACTTTAATGGTGGGGATGCTTTCCGTGATGGACTTGAGGCCCCACGCTT

Function

symbol description
slc9a1 Enables calcium-dependent protein binding activity; protein phosphatase 2B binding activity; and sodium:proton antiporter activity. Involved in several processes, including cellular monovalent inorganic cation homeostasis; inorganic cation transmembrane transport; and regulation of heart contraction. Located in several cellular components, including membrane raft; nucleoplasm; and plasma membrane. Is integral component of plasma membrane. Part of cation-transporting ATPase complex. Implicated in autosomal recessive spinocerebellar ataxia 19 and congestive heart failure.

NR:

description
PREDICTED: sodium/hydrogen exchanger 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172219 True 4492 TUCP 0.40 2 26379672 26384187

Neighbor

gene id symbol gene type direction distance location
fam110d si:ch211-107n13.1,LOC107688188,LOC107707635,LOC107726719,LOC107564093,LOC107552531,LOC107671482 coding downstream 64827 26299517 ~ 26314845 (-)
LOC122360092 LOC107688189,LOC107564095,LOC107707648,LOC107671448,LOC107552527,LOC107726716,LOC107552528,LOC107671449 coding downstream 105981 26270993 ~ 26273691 (-)
LOC122360606 LOC107552511,LOC107671451,LOC107707651,LOC107688191,LOC107552530 coding downstream 109527 26267933 ~ 26270145 (-)
LOC122360603 LOC107707651,LOC107688191,LOC107552530,LOC107552511,LOC107671451,LOC107564104 coding downstream 112323 26264744 ~ 26267349 (-)
LOC122360602 LOC107726716,LOC107707650,LOC107552528,LOC107688189,LOC107564095,LOC107707648,LOC107552525,LOC107671450 coding downstream 116039 26259976 ~ 26263633 (-)
ubr5 ubr5,LOC107677650,LOC107659085 coding upstream 437970 26822157 ~ 26868971 (-)
LOC122360494 LOC107677651,LOC107565755,LOC107729815,LOC107601969 coding upstream 494484 26878671 ~ 26888899 (-)
LOC122361111 atp6v1c1a,atp6v1c1,LOC107601989,LOC107729816,LOC107659089,LOC107565754,LOC107724997 coding upstream 573454 26957641 ~ 26969940 (-)
LOC122361113 NA coding upstream 691317 27075504 ~ 27078615 (-)
spire1b spire1,LOC107565753,LOC107677663,LOC107601988,LOC107659090 coding upstream 796450 27180637 ~ 27204293 (-)
G116368 NA non-coding downstream 96815 26105017 ~ 26282857 (-)
G116360 NA non-coding downstream 248866 26130280 ~ 26130806 (-)
G116359 NA non-coding downstream 251046 26071160 ~ 26128626 (-)
G116351 NA non-coding downstream 306666 26020525 ~ 26073006 (-)
G116350 NA non-coding downstream 310138 26062291 ~ 26069534 (-)
G116611 NA non-coding upstream 1611 26385798 ~ 26386007 (-)
G116633 NA non-coding upstream 236103 26620290 ~ 26678901 (-)
G116638 NA non-coding upstream 288737 26672924 ~ 26673379 (-)
G116647 NA non-coding upstream 354918 26739105 ~ 26739861 (-)
G116648 NA non-coding upstream 357389 26741576 ~ 26743789 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other downstream 668986 25664719 ~ 25710686 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 1906307 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 2010106 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 2039884 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 2704327 23668065 ~ 23675345 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 37531 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 422933 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 426130 26810317 ~ 26812974 (-)
G116668 NA other upstream 490211 26874398 ~ 26876610 (-)
G116677 NA other upstream 570033 26954220 ~ 26955834 (-)

Expression


Co-expression Network