G116666


Basic Information

Item Value
gene id G116666
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26817032 ~ 26874360 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU172333
taataataataataataataataataataataataaaaaaaaataaaaatgaagcaaaactaaatattaatacgCTCAGCCACCAAGCTTAAAAGAGCTCAGAAAGTTCCCGAAGTTAAAGAAAAGCCCATAAACGCTGAAGTGGACAGGAGCCAATCAAAGGGAAAGAAAGGATGGATTGTAAAACTGCCTTTGATTACGTACAGAAATCATGTGCTCTGTAATGGTAGGATACAGCATTAAAACGggttacctttaacatgcttgacctttgaccttcagCTTGACCTTTATTGTCTTTAACCGCCTCCGAGAAGGACTTGGGGATGTCTGTGCCCAATAAGCTTTAgtcttttcctctttctttggTCAGAACGAGGCCTTGACTCCAATTTTTGGTCCCCTTTGAATCTTCAAGCTTTAACTCTCTCTTTATTGTCTTTGTCTTGAATCTAACTCTACACCGGCCcttttaaatattctttgtAGGGAAGGTCTCCAGAACTGTATGTCTTTACATTTTCTGAGACAACAACAGAGGAAATATCGGTTAGGAGACAAACATCGGACACGTCCACGGCCAACCAAGCTTTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172333 True 597 lncRNA 0.38 2 26817032 26874360

Neighbor

gene id symbol gene type direction distance location
fam110d si:ch211-107n13.1,LOC107688188,LOC107707635,LOC107726719,LOC107564093,LOC107552531,LOC107671482 coding downstream 502187 26299517 ~ 26314845 (-)
LOC122360092 LOC107688189,LOC107564095,LOC107707648,LOC107671448,LOC107552527,LOC107726716,LOC107552528,LOC107671449 coding downstream 543341 26270993 ~ 26273691 (-)
LOC122360606 LOC107552511,LOC107671451,LOC107707651,LOC107688191,LOC107552530 coding downstream 546887 26267933 ~ 26270145 (-)
LOC122360603 LOC107707651,LOC107688191,LOC107552530,LOC107552511,LOC107671451,LOC107564104 coding downstream 549683 26264744 ~ 26267349 (-)
LOC122360602 LOC107726716,LOC107707650,LOC107552528,LOC107688189,LOC107564095,LOC107707648,LOC107552525,LOC107671450 coding downstream 553399 26259976 ~ 26263633 (-)
LOC122360494 LOC107677651,LOC107565755,LOC107729815,LOC107601969 coding upstream 4311 26878671 ~ 26888899 (-)
LOC122361111 atp6v1c1a,atp6v1c1,LOC107601989,LOC107729816,LOC107659089,LOC107565754,LOC107724997 coding upstream 83281 26957641 ~ 26969940 (-)
LOC122361113 NA coding upstream 201144 27075504 ~ 27078615 (-)
spire1b spire1,LOC107565753,LOC107677663,LOC107601988,LOC107659090 coding upstream 306277 27180637 ~ 27204293 (-)
LOC122361070 tppp,LOC107659066,LOC107677661,LOC107565752,LOC107754442,LOC107601987 coding upstream 339730 27214090 ~ 27228568 (-)
G116648 NA non-coding downstream 73243 26741576 ~ 26743789 (-)
G116647 NA non-coding downstream 77171 26739105 ~ 26739861 (-)
G116633 NA non-coding downstream 138131 26620290 ~ 26678901 (-)
G116638 NA non-coding downstream 143653 26672924 ~ 26673379 (-)
G116611 NA non-coding downstream 431025 26385798 ~ 26386007 (-)
G116696 NA non-coding upstream 278986 27153346 ~ 27213613 (-)
G116700 NA non-coding upstream 280735 27155095 ~ 27157490 (-)
G116710 NA non-coding upstream 364626 27238986 ~ 27240139 (-)
G116711 NA non-coding upstream 366255 27240615 ~ 27241091 (-)
G116721 NA non-coding upstream 425134 27299494 ~ 27307565 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other downstream 4058 26810317 ~ 26812974 (-)
G116654 myom3,LOC107659064,LOC107729819 other downstream 7886 26807120 ~ 26809146 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other downstream 309980 26421718 ~ 26507052 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other downstream 432845 26379672 ~ 26384187 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other downstream 1106346 25664719 ~ 25710686 (-)
G116668 NA other upstream 38 26874398 ~ 26876610 (-)
G116677 NA other upstream 79860 26954220 ~ 26955834 (-)
LOC122360878 NA other upstream 119614 26993974 ~ 26998359 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other upstream 484347 27358707 ~ 27360829 (-)
LOC122360079 NA other upstream 645830 27520190 ~ 27579866 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_01847624_01849735 NA coding CI01000086 null 1846841 ~ 1849914 (+)
striped catfish (Pangasianodon hypophthalmus) srsf10a LOC108256391,LOC108426370,LOC101486875 misc NC_047616.1 CM018562.1 4924781 ~ 4930155 (+)