LOC122360079


Basic Information

Item Value
gene id LOC122360079
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27520190 ~ 27579866 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU172389
TGGTGCCGCCGCGCTGGATGATCTCGACGTCTTCGGTACAGATGAAGCCGTTCAGCTGGAGATTGTCCAGAATGCACTGCGTGTTCTTCACCTGCTCCACCAGCAGCTCGCGGTGTGACGTCAGCAGCCTCAGGGGCTCTTTCTAAAGACTGTACCTGTAGATACTGCGGCGAAGGTGGTGCATAAACGCAGCTGTTCATGATGTACGTCCGACAGCTCAGGTCCTGTCCGCTGGTGGAGACGTTGACCTCCACTGGACTGTAGGTGCCCATTTTCACGTTCTCCTGCCTGCAGAGGAACGTCCAGCACACATGAGGAGCTTTCTGACGAGATCTCGGACTAAAACATATACTGAGTGCCGTTTGGGGTCTACCTGTCGAGGGACTCCAGGTCTGACATGTTCATCCTCCACACGACGCCCCAGACCTCGTCCCCGGGGCTGTGTTCGATGGTGGCGACCCCTCCGTGCCAGCGCTGACTCGCCAGTCCTTTATGATTCCCGAAAGCCAGTTTATAATCCTGCAGAGGAGCACCAGACGGACACCGGAGTAGACAGACGCCTTCAACATGATCACCGTTTATTTGCTACGGTTACGAAAACGGTAATAAACCATGACATGAACTACTGGGAGAACCAATGTGTGTATTTGGTTGcctcaaaatatgtttatttttatgccaaaagTTACCATATTAGGTGAAGGtcgtgttccatgaagatattttgtgcatttcctACCACCAATATATCAAAACGTCATTTTCGATCAGTAATATGTATAGAAATACATTTGGACGACTTTAAAGGGcggttttctcaatatttcgaaGTCTTGGAGATCTTGAAATGATGTCGAAGTCGGTGGCTTTCCAGACGGCGTGACCGAGCAGGTCGcccaccttcttcttcttcgtgaTGACGATGAGATACATGCCTGAGAAGAGACACCGAGAGGCATGAACGAGCTGAGAAAGCTCTCGGCCGGAGCTCGGCCCATCGAGAGAAGTCCTACCTGCCACCAGCCGTATGGTTCCCATGATGCCACACATCGGACGCGTCACTGCAGACGGAGGGACGTCC
>XR_006252761.1
CTTGGTGCCGCCGCGCTGGATGATCTCGACGTCTTCGGTACAGATGAAGCCGTTCAGCTGGAGATTGTCCAGAATGCACTGCGTGTTCTTCACCTGCTCCACCAGCAGCTCGCGGTGTGACGTCAGCAGCCTCAGGGGCTCTTTCTAAAGACTGTACCTGTAGATACTGCGGCGAAGGTGGTGCATAAACGCAGCTGTTCATGATGTACGTCCGACAGCTCAGGTCCTGTCCGCTGGTGGAGACGTTGACCTCCACTGGACTGTAGGTGCCCATTTTCACGTTCTCCTGCCTGCAGAGGAACGTCCAGCACACATGAGGAGCTTTCTGACGAGATCTCGGACTAAAACATATACTGAGTGCCGTTTGGGGTCTACCTGTCGAGGGACTCCAGGTCTGACATGTTCATCCTCCACACGACGCCCCAGACCTCGTCCCCGGGGCTGTGTTCGATGGTGGCGACCCCTCCGTGCCAGCGCTGACTCGCCAGTCCTTT

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0003839 gamma-glutamylcyclotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172389 True 1081 TUCP 0.52 4 27520190 27579864
XR_006252761.1 False 494 lncRNA 0.57 3 27569964 27579866

Neighbor

gene id symbol gene type direction distance location
si:ch211-269k10.4 NA coding downstream 138401 27375901 ~ 27381789 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 262180 27242882 ~ 27258010 (-)
zdhhc11 NA coding downstream 277451 27229786 ~ 27242739 (-)
LOC122361070 tppp,LOC107659066,LOC107677661,LOC107565752,LOC107754442,LOC107601987 coding downstream 291622 27214090 ~ 27228568 (-)
spire1b spire1,LOC107565753,LOC107677663,LOC107601988,LOC107659090 coding downstream 315897 27180637 ~ 27204293 (-)
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding upstream 33907 27613773 ~ 27621631 (-)
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding upstream 48691 27628557 ~ 27630274 (-)
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding upstream 51900 27631766 ~ 27637531 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding upstream 105401 27685267 ~ 27690120 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding upstream 110574 27690440 ~ 27693938 (-)
G116733 NA non-coding downstream 30511 27378560 ~ 27489679 (-)
G116727 NA non-coding downstream 41547 27438512 ~ 27478643 (-)
G116748 NA non-coding downstream 145023 27372529 ~ 27375167 (-)
G116730 NA non-coding downstream 148813 27367832 ~ 27371377 (-)
G116723 NA non-coding downstream 211969 27307776 ~ 27308221 (-)
LOC122360078 NA non-coding upstream 4788 27584654 ~ 27592026 (-)
G116812 NA non-coding upstream 28346 27608212 ~ 27608965 (-)
G116814 NA non-coding upstream 32202 27612068 ~ 27612500 (-)
G116833 NA non-coding upstream 96122 27675988 ~ 27677259 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding upstream 121260 27701126 ~ 27704934 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 159361 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 521831 26993974 ~ 26998359 (-)
G116677 NA other downstream 564356 26954220 ~ 26955834 (-)
G116668 NA other downstream 643580 26874398 ~ 26876610 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other downstream 707216 26810317 ~ 26812974 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other upstream 42763 27622629 ~ 27627660 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 127850 27707716 ~ 27804770 (-)
G116868 NA other upstream 383622 27963488 ~ 27964958 (-)

Expression


Co-expression Network