LOC122359885 (rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134)


Basic Information

Item Value
gene id LOC122359885
gene name rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27622629 ~ 27627660 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU172557
CGATTGGTTGCATACGGTGTGTATGTCACCGTTTCATTGGCTGAACAGGTGCACTAATGCACCCAGTTTCATGTGACTGCACCTGCGCTCGCCCTACCTGTCTGACCTGACTTGAGCGCACCAAAAGTCACGCCCACCTTCCCCCAGGTCAGCCATTGTATCACGGAGAGGAGGATCTTTCCTTCTCCGTTTTCCTTGAAATTGGTTGGGATTTTGACTCATGCAGCAATAATCTAGATCAGTGAAGGAAGATCTGCTTACAACATGGGGTCTGAAGAGGCCTACAACTTTGTTTTCAAAGTGGTTCTTATTGGAGAGTCTGGCGTTGGCAAGAGCAACTTGCTGTCACGGTTCACCAAGAATGAGTTTAATCACGACAGCCGGACGACCATCGGGGTGGAGTTCAGCACCAGAACTGTGCAGTTAAACGGCCTCACCATCAAAGCTCAGATCTGGGACACAGCCGGACTGGAGCGGTACCGGGCCATCACTTCCGCATATTACCGAGGAGCGGTCGGAGCTCTGCTAGTCTATGACATTTCAAAGCACTTGACATATGAAAGTGCTGAGCGCTGGCTGAAGGAGCTCTACGATCACGCAGATCCTCATATCGTAGTGATGCTTGTGGGCAACAAATCGGACCTGGCAGCAGTGCGGTCTGTCCCAACAGAGGACGCCAAGGACTTTGCAGaaAAGAATGGTCTTCTATTCATGGAAACCTCTGCTTTGGAGTCAGTAAACGCCGAGGCGGCGTTCAACACCGTGCTTACAGAAATCCACAAAAAGGTGAGCAGCAAAGAAGTGACCCGAGGCTCTATCAATGCCGTGACATTATCCCAACCTAAGGCAGCAGCAGACGACGCACAAGACGAAAA
>XM_043260097.1
CAGGTACGGCACATTTGATAGCGGAACTGCCAGGCTAAATAACAAGGCTAGTTCCTTGTACAAACAGCTGAACTGTCCACCATAAACGGTGGGGTGCTTCTCAACGTTTCTCCATTTCAGGTCAGCCATTGTATCACGGAGAGGAGGATCTTTCCTTCTCCGTTTTCCTTGAAATTGGTTGGGATTTTGACTCATGCAGCAATAATCTAGATCAGTGAAGGAAGATCTGCTTACAACATGGGGTCTGAAGAGGCCTACAACTTTGTTTTCAAAGTGGTTCTTATTGGAGAGTCTGGCGTTGGCAAGAGCAACTTGCTGTCACGGTTCACCAAGAATGAGTTTAATCACGACAGCCGGACGACCATCGGGGTGGAGTTCAGCACCAGAACTGTGCAGTTAAACGGCCTCACCATCAAAGCTCAGATCTGGGACACAGCCGGACTGGAGCGGTACCGGGCCATCACTTCCGCATATTACCGAGGAGCGGTCGGAGCTCTGCTAGTCTATGACATTTCAAAGCACTTGACATATGAAAGTGCTGAGCGCTGGCTGAAGGAGCTCTACGATCACGCAGATCCTCATATCGTAGTGATGCTTGTGGGCAACAAATCGGACCTGGCAGCAGTGCGGTCTGTCCCAACAGAGGACGCCAAGGACTTTGCAGaaAAGAATGGTCTTCTATTCATGGAAACCTCTGCTTTGGAGTCAGTAAACGCCGAGGCGGCGTTCAACACCGTGCTTACAGAAATCCACAAAAAGGTGAGCAGCAAAGAAGTGACCCGAGGCTCTATCAATGCCGTGACATTATCCCAACCTAAGGCAGCAGCAGACGACGCACAAGACGAAAAGAAGGCCTGCTGTAAAACTCTGTGAAAGAACATCCCAGAACTTCACGAGGGTCCTAAAGGAGCTGCGAATTCAGCTTCTGCAGTAGAGTTAGGATTATGAAAGAACGAGtatgataaaaatgataaaaagcaaATCCATCGCATTGACTGACATAGCcatatttgtattgttaaatattatgtaacaagtaaaatacattttaatgtttatcagGCTTGACCAAAAAAATCATGtcgattttaattaatttgaatgtgttttccTAAATGTCCCCTTTGAGTTTTTCTTTGTAGTATTTATGAAATGTCATgccaaattataatttttttttataattgcattcattcaacagactttttttttttttaatccaaagaGACTTTTAAATGTAGCATACAACAAGCTATTCATCTCACTCAAGTTATTAAAAATTGACAGATTAACTTTATCGCTTTAATTAGTGTAAAatggaagaaaggaaaaaaaaaaaaaaaatttttcggTTTGCATGTTCATCCTCACTGTTcggtttttaatttgatttgttcaACACACCTAATGAAGATAATAACCCACACACGTGTGgttaagaaaataatttttaatattcaagaCTAATCAGCgctaatttaatattttgtagcaTAGCATTTAAAAGTGTTGATTTGTATCCTCATGAATGAATACCGGTGCTGCAGGTATTATCAGTTGCTGCTCTTAACATgacataaagaaaatatatacatatatatgtcaTTTTCCATTAAGAATTAAAGCagaaatatgcatgaaaaatg

Function

symbol description
rab25b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Orthologous to human RAB25 (RAB25, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-25-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07906 RAB25; Ras-related protein Rab-25

RNA

RNA id representative length rna type GC content exon number start site end site
TU172557 False 875 TUCP 0.51 6 27623427 27627660
XM_043260097.1 True 1646 mRNA 0.40 5 27622629 27627516

Neighbor

gene id symbol gene type direction distance location
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding downstream 998 27613773 ~ 27621631 (-)
LOC122360076 slc6a20,LOC106605517,LOC106579373 coding downstream 63657 27538393 ~ 27558972 (-)
si:ch211-269k10.4 NA coding downstream 240840 27375901 ~ 27381789 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 364619 27242882 ~ 27258010 (-)
zdhhc11 NA coding downstream 379890 27229786 ~ 27242739 (-)
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding upstream 897 27628557 ~ 27630274 (-)
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding upstream 4106 27631766 ~ 27637531 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding upstream 57607 27685267 ~ 27690120 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding upstream 62780 27690440 ~ 27693938 (-)
tmem176l.4 NA coding upstream 269068 27896728 ~ 27900760 (-)
G116814 NA non-coding downstream 10129 27612068 ~ 27612500 (-)
G116812 NA non-coding downstream 13664 27608212 ~ 27608965 (-)
LOC122360078 NA non-coding downstream 30603 27584654 ~ 27592026 (-)
G116733 NA non-coding downstream 132950 27378560 ~ 27489679 (-)
G116727 NA non-coding downstream 143986 27438512 ~ 27478643 (-)
G116833 NA non-coding upstream 48328 27675988 ~ 27677259 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding upstream 73466 27701126 ~ 27704934 (-)
G116835 NA non-coding upstream 78946 27706606 ~ 27707458 (-)
G116865 NA non-coding upstream 324908 27952568 ~ 27954707 (-)
G116867 NA non-coding upstream 332971 27960631 ~ 27961680 (-)
LOC122360079 NA other downstream 42763 27520190 ~ 27579866 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 261800 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 624270 26993974 ~ 26998359 (-)
G116677 NA other downstream 666795 26954220 ~ 26955834 (-)
G116668 NA other downstream 746019 26874398 ~ 26876610 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 80056 27707716 ~ 27804770 (-)
G116868 NA other upstream 335828 27963488 ~ 27964958 (-)

Expression


Co-expression Network