G116814


Basic Information

Item Value
gene id G116814
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27612068 ~ 27612500 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU172570
AAAGACTCTGAACGCTGCAAATAGGTTTCTACGTTTTCACTGATCATGAATGTTTATTAgccgttgttttttttttttttttaaagcttgggTGAATATATTTTACGTACACACTTGAAAACTTGTGCATTTTACAGGGTTCCCACATCTTTTGACTTCCGCATGACCTTTCCAGTCTTTCCTGAACACTGGATAAGGAAAATTCATCGTATAGAGATTGCACCCACAAAGAGCAATTTCTAGttgatgaaatatttatgagctttttgaaatgttattaatttcCATGACTTTTCCAGGCGATTTTAAAATTCCGTGACCGTGGGAACCCGTGAACGCttctgtttttaaacttttttttgggtgatttttatcctttttttttttttttcctcaacttGTGGAATTTGCTGTGTATTTTAataacgtgtat

Function

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0031982 vesicle cellular_component

KEGG:

id description
ko04144 Endocytosis
ko04217 Necroptosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU172570 True 433 lncRNA 0.34 1 27612068 27612500

Neighbor

gene id symbol gene type direction distance location
LOC122360076 slc6a20,LOC106605517,LOC106579373 coding downstream 53096 27538393 ~ 27558972 (-)
si:ch211-269k10.4 NA coding downstream 230279 27375901 ~ 27381789 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 354058 27242882 ~ 27258010 (-)
zdhhc11 NA coding downstream 369329 27229786 ~ 27242739 (-)
LOC122361070 tppp,LOC107659066,LOC107677661,LOC107565752,LOC107754442,LOC107601987 coding downstream 383500 27214090 ~ 27228568 (-)
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding upstream 1273 27613773 ~ 27621631 (-)
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding upstream 16057 27628557 ~ 27630274 (-)
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding upstream 19266 27631766 ~ 27637531 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding upstream 72767 27685267 ~ 27690120 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding upstream 77940 27690440 ~ 27693938 (-)
G116812 NA non-coding downstream 3103 27608212 ~ 27608965 (-)
LOC122360078 NA non-coding downstream 20042 27584654 ~ 27592026 (-)
G116733 NA non-coding downstream 122389 27378560 ~ 27489679 (-)
G116727 NA non-coding downstream 133425 27438512 ~ 27478643 (-)
G116748 NA non-coding downstream 236901 27372529 ~ 27375167 (-)
G116833 NA non-coding upstream 63488 27675988 ~ 27677259 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding upstream 88626 27701126 ~ 27704934 (-)
G116835 NA non-coding upstream 94106 27706606 ~ 27707458 (-)
G116865 NA non-coding upstream 340068 27952568 ~ 27954707 (-)
G116867 NA non-coding upstream 348131 27960631 ~ 27961680 (-)
LOC122360079 NA other downstream 32202 27520190 ~ 27579866 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 251239 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 613709 26993974 ~ 26998359 (-)
G116677 NA other downstream 656234 26954220 ~ 26955834 (-)
G116668 NA other downstream 735458 26874398 ~ 26876610 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other upstream 10129 27622629 ~ 27627660 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 95216 27707716 ~ 27804770 (-)
G116868 NA other upstream 350988 27963488 ~ 27964958 (-)

Expression


Co-expression Network