G116834 (rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473)


Basic Information

Item Value
gene id G116834
gene name rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27701126 ~ 27704934 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU172605
gcacatcTTTTCCACACTGAGCATACGATCACGACATTGTTCCTTGGAGTCGAACCTGAAACTGTGGGACTAATTTGAAAACTTGGAGGTCATTCCAGCAGCTCTTCTTCCCGAGAAGCaaatgtcCAGTCCACTAGAGCGGGTTGTAGCCCAGAAGAAGGAGGCCATTGAAGCAGTAATGGAGATGTTCGAGAGAGGAGCCGAGGTGCTGGCCAGTGCTGTCGGGGACTATGTCCTCTTTGAAGCTTCTGCTCCAGTTTTGAGACTGGTCTTGACAACGTGGAGAGCAAAGAGGTCACATACGTCAAAGACCAGTTTCTAGTAGTGAGGAGCAAATTAGACGTCCTCTCGTGTCAGTTACAGGACATTGACTCTGAGATCAGAAGGAGACGGTTGGATTCTCAGTTCTTCTCTGTGGAAGAAAATTTGCGAAACCAGTTTAGAAAATACATAGACATTCTGGAGGCTAAACCTGAGTATAAGGAAGTCAAAAAACGCTTGTTCTTAGAGCATTTTCTCATAACAGGAGGAGAGAAAAACCTAAATGTGCTTTACGATGCTGTGATGGGGAACAGCACATTTGGAGAACCGATCCTGGATGTTGTGGAGCAATACGAGGCCAAAAGCAGAAGAGTCCTGGAAGATTTCTGCGTCAGACTGAAGGAGCTGCTCTGCTTGGGAATCATCGCTCTGCTGGGATACTGTTTCCTTACTCAGGGTGAGGAATCAGAGCAGGAGAAGATTCAAGAGTGGGGCACGAAGATCCAAGAAATTGAGACGAAAATGAAGGAAATGATAGAAAGATGCGTTGATACGCTTTCCAGAGCAAGCTGAACTGGACATCAAGAGGCTTGTGAAGGAGAAAGAAGATGAGAACCTTCAGGAAACGGCCAGAGAACTGCTGGACTTCCTGGTGAAGAAGTACGACTGGGTGAGCTGGTCCATCAGAGTCATTAGCAACTTGGGCAAAATTAGCAACTTAAGAGCCGGACAAAACTTTCAGTGCGTGGCCGGACAGAATTACTTTGAAGTATCTCAAGGAAATGACACCAACCTGGTGGTCTCCTTCAGCAGCGACCCTCAGCCCGTGTCCAACGAGAGCGTGAAGCAGATGATGGAAGGCCCTGCGAGGAAAGGAGACCCCAAAGCTGTCGTGGAGCTTCTGGAGAAGCAGTTAGCTGGGTTTCTGGTTCACGCCAGTCGCCACAAGGACAGCTTTGCTCTGTCGAGTTTTCCTGAAGAATGTCACTACTGGGAGAAACATAAGAACGTGAATCTCTGTGTGCATTCAGAGTAGATCCTGACATAAACATATAATTGCTATTATCATGTTGCTAACATTTTGCAACTGCATCGCTTTGTTCATTATCATGTCttgaaaaaatcatttgttCAGGTAGCTATTAGCTATCTgactaaataaatttaaaaatagattattttaacaatttcttttcctttatgtacatttatgtaaattttaaatgaaaaaaaactgtttagaactgttttggaCTGGTTTTGCTTGTAAACAATGCCTGATCTGTGCATACTTCTCTAAGACACTAGGACAAGATGACTTTTTCACcagagaaagcaatattatacaGGACTtatattttagctggaagcaatAGTTTGAAGTTAAATAGTTAAGTTAAAGTTAAGTTGGCTTTACAGCACGTTAcccgatggactggagtgatgtggattattgtgatgtttatatCGGCTGTTTTGGACTgtcactctgacggcacccattcactgtagagtCAATTGGCGAGCAAGGGATGCAAAGCAAAacttctgatgaagaaacaaaccgagggtgagcacattttttgcaattttcatctttgggtgaacttttcctttaaacgCATTAAACACTGTGTAAATTCAACCGCCAtgttttcaaactaaatttgttGACTATTTGTGCTTTATTACTGCGCATGTTAGCCTAATGTTATAATGTAGCTGAATGTCTATTTGAAAGCGTTCCTTTAAACGCAGTTTAGGCAGCAACCGTGCTTAATGTTGTGAAGtaataaaatgctttgaagTAATAAAAACTGTAGTAATACGAATGCATAGTATCGCAAAGAAAAGCGTTTCCCCATTTAGCCTGCATGATAATAACACGCATAGCTGTCAGTATCTGTTCCTCATCGGCCATAAAAAAAGCCCACGGCAAGACGTCTCAGGAAATGAATGCATGTCTTGCACAGCAGAGTGCGCATGATGTTAGACTAAAATAAACCCTTTAAAAATTCATGTCGGTTCAAGCTGAACTTAAACACCGCCAAGATACAACTGAGGTACATTGTTG

Function

NR:

description
extracellular matrix protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172605 True 2335 lncRNA 0.42 2 27701126 27704934

Neighbor

gene id symbol gene type direction distance location
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding downstream 7188 27690440 ~ 27693938 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding downstream 11006 27685267 ~ 27690120 (-)
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding downstream 63595 27631766 ~ 27637531 (-)
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding downstream 70852 27628557 ~ 27630274 (-)
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding downstream 79495 27613773 ~ 27621631 (-)
tmem176l.4 NA coding upstream 191794 27896728 ~ 27900760 (-)
mex3a mex3a,LOC107592477,LOC107688221,LOC107592188,LOC107756899,LOC106605309 coding upstream 228140 27933074 ~ 27939751 (-)
zmp:0000000881 LOC107756898,LOC107688220,LOC107592478,LOC107726696,LOC107671483,LOC107592126 coding upstream 261508 27966442 ~ 27971009 (-)
LOC122360891 thsd7a,LOC107671443,LOC107688266,LOC107756884,LOC107726647,LOC107592524 coding upstream 385951 28090885 ~ 28127371 (-)
G116833 NA non-coding downstream 23867 27675988 ~ 27677259 (-)
G116814 NA non-coding downstream 88626 27612068 ~ 27612500 (-)
G116812 NA non-coding downstream 92161 27608212 ~ 27608965 (-)
LOC122360078 NA non-coding downstream 109100 27584654 ~ 27592026 (-)
G116733 NA non-coding downstream 211447 27378560 ~ 27489679 (-)
G116835 NA non-coding upstream 1672 27706606 ~ 27707458 (-)
G116865 NA non-coding upstream 247634 27952568 ~ 27954707 (-)
G116867 NA non-coding upstream 255697 27960631 ~ 27961680 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other downstream 73466 27622629 ~ 27627660 (-)
LOC122360079 NA other downstream 121260 27520190 ~ 27579866 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 340297 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 702767 26993974 ~ 26998359 (-)
G116677 NA other downstream 745292 26954220 ~ 26955834 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 2782 27707716 ~ 27804770 (-)
G116868 NA other upstream 258554 27963488 ~ 27964958 (-)

Expression


Co-expression Network