calhm6 (fam26f,LOC107700692,LOC107552824,LOC107716816)



Basic Information


Item Value
gene id calhm6
gene name fam26f,LOC107700692,LOC107552824,LOC107716816
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23367501 ~ 23368953 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043259987.1
TAATAAAGCCAGTTTGCCAATACAGCTATAAAGCTAACATTAACCAGTTTCTCTTAAATGAAGTCCAACACTTCGCATGCTTTTATCGCGTGCCCGCCTGAAGGTGAAACTCTCTCAAAACGGAACTGAGTGTCATTTCATGGTTTAGACTATCGTTAAAGAACAGAGAGCTTACGGTCGTCCGCTGGAGACATGGATAAATTAAAACCTTTACTCAGCTTCACACAGAAACAGCAGACCAACTTAGGATTCGGATTGATTGCTCTTATAACTGCGGGTAGCGAGCACATCTTCTCGGTCTTTGCTTTTAAGTGTCCTTGCAATGATTGGAATTTCGTTTATGGCAACGTCTGCCTCCTCGTGCCCGCGCTTGCGTTGCTCATCTTAAGTTACATGCTGAGcaataaaacatggaaactgTTCACAGGCCTGTGCCTTAGGAAATCGAAGCTATGTCGTTTCAGATACGTGATTGGcttcctgtgtgtttttcttcaaatcACCACGACGGCGATGATCGCTCCTCTCAGCTGGATCGCGGTGGCTCTGCTCAGAGGGGTGTATTTCGAGTGCTCAATGACCGGCGCCAACTTTACACTTTTTAGGCGTCACCTTTGCAACGAAAAGTTTCCTCACTGCCGGACAGAGTTGGAGAAGTTCCCTTGTGATGGAACTGCGATTCCTCAGAGCGAGAGAGCAGCTGTGCTGTCCATCATACGCGCGGAGTCACAGGTACTTGGTTGGATCCTGATAGGTTCTGTGATGACATTCACCTTTCTGCTCACGTGCATGGCCAGATGCTATTCTCCAATCAGCTACATGCAGCTGAAGTTTTGGAGGATGTACACTCAGAAGGAGAGTGAGTTTTTGGACAGCTATACGGCTCAGCATGCCGAAAAGCTTGCGAAGAGAAACCTTACAAGTTTCTTTGATTTAACCAAGCCCATTCTCATGAAGAGCCCACCTAGAAAGGCCTGGGAGAAGATCTCCTCCTTTTACAAATATCGAAGCATGGACGAATACTACAGCACCCTGCACAAGTATGTGTGCACTTGTGAGGACCTTGAAAATCCAGGAGCACGGCCTTCAGTGAGGtctgaaaatgatttttcaaaCCCAGCAGCAATTGCATTTGTGGATGAAGGCAAATTAGTCATGTCCTGACAGCTTTCCATGCTTGGGCATAAACAGAGTGCTTGCTTCTGTTCACTGTTCTTCTAGTATTGCTACtttagcttttctttttaatactacaactgtttgtttttgacatgggttgtttcattttatttttgtctttcaaTATATCTTTtagattaacaataaaaaaaaaaattcagttgaA

Function


NR:

description
PREDICTED: protein FAM26F-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043259987.1 True 1345 mRNA 0.44 2 23367501 23368953

Neighbor


gene id symbol gene type direction distance location
calhm5.1 LOC107704861,LOC107716815,LOC107587898,LOC107711741,LOC107552825 coding downstream 128 23362337 ~ 23367373 (-)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695,LOC107552826 coding downstream 6127 23358473 ~ 23361374 (-)
kpna5 kpna5,LOC107704934,LOC107716841,LOC107552832,LOC107711738 coding downstream 19487 23339451 ~ 23348014 (-)
cnot3a cnot3a,LOC107711735,LOC107587779,LOC107700763,LOC107552836,LOC107704926 coding downstream 52740 23306694 ~ 23314761 (-)
LOC122359881 LOC107716830,LOC107587785,LOC107682987 coding downstream 101029 23264286 ~ 23266472 (-)
mms22l mms22l,LOC107716844,LOC107587771,LOC107711743,LOC107552829,LOC107700675 coding upstream 20470 23389423 ~ 23403630 (-)
fbxl4 fbxl4,LOC107587770,LOC107716847,LOC107704940,LOC107711744,LOC107552823,LOC107700759 coding upstream 158135 23527088 ~ 23536822 (-)
faxcb faxcb,LOC107587769,LOC107700756,LOC107711729,LOC107704942,LOC107716849,LOC107552822 coding upstream 187822 23556775 ~ 23566844 (-)
coq3 LOC107711746,LOC107700757,LOC107716851,LOC107552820 coding upstream 198105 23567058 ~ 23572317 (-)
pnisr pnisr,LOC107704944,LOC107716852,LOC107700755 coding upstream 204018 23572971 ~ 23579881 (-)
G115669 NA non-coding downstream 39608 23326208 ~ 23327893 (-)
G115631 NA non-coding downstream 177851 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 199561 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 289631 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 294051 23072259 ~ 23073450 (-)
G115910 NA non-coding upstream 446944 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 447947 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 451566 23820519 ~ 23822288 (-)
LOC122359981 NA non-coding upstream 675807 24044760 ~ 24057262 (-)
G115939 NA non-coding upstream 708678 24077631 ~ 24077867 (-)
G115554 NA other downstream 433534 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 466314 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1278409 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1398966 21964855 ~ 21968535 (-)
G115149 NA other downstream 1563697 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 150855 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 214040 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 299112 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 948529 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 995687 24364640 ~ 24369566 (-)

Expression



Co-expression Network